Abstract An in-vacuum Hall probe measurement system was designed, built, and used to measure four Cryogenic Permanent Magnet Undulators (CPMUs) at Diamond Light Source. The devices were tuned to correct the phase error at cold temperatures based on the measurements from the in-vacuum system. The in-vacuum system consists of a stretched wire system supplied by Danfysik and an in-house built Hall probe system. The Hall probe system has gone through two iterations: the first beam was prone to deforming with temperature changes; the second was made thicker following design changes to the magnet holders and girders of the CPMUs which allowed more space for the beam inside the vacuum vessel. The design and commissioning of the measurement system will be presented, along with some measurements of the CPMUs at room temperature and at 77 K. Details such as triggering of the Hall probe measurements, height compensation, and temperature compensation will be covered.