E-resources
-
Valliyodan, Babu; Brown, Anne V; Wang, Juexin; Patil, Gunvant; Liu, Yang; Otyama, Paul I; Nelson, Rex T; Vuong, Tri; Song, Qijian; Musket, Theresa A; Wagner, Ruth; Marri, Pradeep; Reddy, Sam; Sessions, Allen; Wu, Xiaolei; Grant, David; Bayer, Philipp E; Roorkiwal, Manish; Varshney, Rajeev K; Liu, Xin; Edwards, David; Xu, Dong; Joshi, Trupti; Cannon, Steven B; Nguyen, Henry T
Scientific data, 02/2021, Volume: 8, Issue: 1Journal Article
We report characteristics of soybean genetic diversity and structure from the resequencing of 481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 cultivated (Glycine max) varieties (landraces and elites). This data was used to identify 7.8 million SNPs, to predict SNP effects relative to genic regions, and to identify the genetic structure, relationships, and linkage disequilibrium. We found evidence of distinct, mostly independent selection of lineages by particular geographic location. Among cultivated varieties, we identified numerous highly conserved regions, suggesting selection during domestication. Comparisons of these accessions against the whole U.S. germplasm genotyped with the SoySNP50K iSelect BeadChip revealed that over 95% of the re-sequenced accessions have a high similarity to their SoySNP50K counterparts. Probable errors in seed source or genotype tracking were also identified in approximately 5% of the accessions.
Author
Shelf entry
Permalink
- URL:
Impact factor
Access to the JCR database is permitted only to users from Slovenia. Your current IP address is not on the list of IP addresses with access permission, and authentication with the relevant AAI accout is required.
Year | Impact factor | Edition | Category | Classification | ||||
---|---|---|---|---|---|---|---|---|
JCR | SNIP | JCR | SNIP | JCR | SNIP | JCR | SNIP |
Select the library membership card:
If the library membership card is not in the list,
add a new one.
DRS, in which the journal is indexed
Database name | Field | Year |
---|
Links to authors' personal bibliographies | Links to information on researchers in the SICRIS system |
---|
Source: Personal bibliographies
and: SICRIS
The material is available in full text. If you wish to order the material anyway, click the Continue button.