Dynamic light conditions require continuous adjustments of stomatal aperture. The kinetics of stomatal conductance (gs) is hypothesized to be key to plant productivity and water use efficiency (WUE). ...Using step-changes in light intensity, we studied the diversity of light-induced gs kinetics in relation to stomatal anatomy in five banana genotypes (Musa spp.) and modeled the impact of both diffusional and biochemical limitations on photosynthesis (A). The dominant A limiting factor was the diffusional limitation associated with gs kinetics. All genotypes exhibited a strong limitation of A by gs, indicating a priority for water saving. Moreover, significant genotypic differences in gs kinetics and gs limitations of A were observed. For two contrasting genotypes, the impact of differential gs kinetics was further investigated under realistic diurnally fluctuating light conditions and at the whole-plant level. Genotype-specific stomatal kinetics observed at the leaf level was corroborated at whole-plant level by transpiration dynamics, validating that genotype-specific responses are still maintained despite differences in gs control at different locations in the leaf and across leaves. However, under diurnally fluctuating light conditions the impact of gs speediness on A and intrinsic (iWUE) depended on time of day. During the afternoon there was a setback in kinetics: absolute gs and gs responses to light were damped, strongly limiting A and impacting diurnal iWUE. We conclude the impact of differential gs kinetics depended on target light intensity, magnitude of change, gs prior to the change in light intensity, and particularly time of day.
Modern plant phenotyping, often using non-invasive technologies and digital technologies, is an emerging science and provides essential information on how genetics, epigenetics, environmental ...pressures, and crop management (farming) can guide selection toward productive plants suitable for their environment. Thus, phenotyping is at the forefront of future plant breeding. Bibliometric science mapping is a quantitative method that analyzes scientific publications throughout the terms present in their title, abstract, and keywords. The aim of this mapping exercise is to observe trends and identify research opportunities. This allows us to analyze the evolution of phenotyping research and to predict emerging topics of this discipline. A total of 1,827 scientific publications fitted our search method over the last 20 years. During the period 1997-2006, the total number of publications was only around 6.1%. The number of publications increased more steeply after 2010, boosted by the overcoming of technological bias and by a set of key developments at hard and software level (image analysis and data storage management, automation and robotics). Cluster analysis evidenced three main groups linked to genetics, physiology, and imaging. Mainly the model plant "
" and the crops "rice" and "triticum" species were investigated in the literature. The last two species were studied when addressing "plant breeding," and "genomic selection." However, currently the trend goes toward a higher diversity of phenotyped crops and research in the field. The application of plant phenotyping in the field is still under rapid development and this application has strong linkages with precision agriculture. EU co-authors were involved in 41.8% of the analyzed papers, followed by USA (15.4%), Australia (6.0%), and India (5.6%). Within the EU, coauthors were mainly affiliated in Germany (35.8%), France (23.7%), and United Kingdom (18.4%). Time seems right for new opportunities to incentivize research on more crops, in real field conditions, and to spread knowledge toward more countries, including emerging economies. Science mapping offers the possibility to get insights into a wide amount of bibliographic information, making them more manageable, attractive, and easy to serve science policy makers, stakeholders, and research managers.
One of the most important crops cultivated around the world is coffee. There are two main cultivated species,
and
Both species are difficult to improve through conventional breeding, taking at least ...20 years to produce a new cultivar. Biotechnological tools such as genetic transformation, micropropagation and somatic embryogenesis (SE) have been extensively studied in order to provide practical results for coffee improvement. While genetic transformation got many attention in the past and is booming with the CRISPR technology, micropropagation and SE are still the major bottle neck and urgently need more attention. The methodologies to induce SE and the further development of the embryos are genotype-dependent, what leads to an almost empirical development of specific protocols for each cultivar or clone. This is a serious limitation and excludes a general comprehensive understanding of the process as a whole. The aim of this review is to provide an overview of which achievements and molecular insights have been gained in (coffee) somatic embryogenesis and encourage researchers to invest further in the
technology and combine it with the latest omics techniques (genomics, transcriptomics, proteomics, metabolomics, and phenomics). We conclude that the evolution of biotechnology and the integration of omics technologies offer great opportunities to (i) optimize the production process of SE and the subsequent conversion into rooted plantlets and (ii) to screen for possible somaclonal variation. However, currently the usage of the latest biotechnology did not pass the stage beyond proof of potential and needs to further improve.
Crop wild relatives, the closely related species of crops, may harbour potentially important sources of new allelic diversity for (a)biotic tolerance or resistance. However, to date, wild diversity ...is only poorly characterized and evaluated. Banana has a large wild diversity but only a narrow proportion is currently used in breeding programmes. The main objective of this study was to evaluate genotype‐dependent transpiration responses in relation to the environment. By applying continuous high‐throughput phenotyping, we were able to construct genotype‐specific transpiration response models in relation to light, VPD and soil water potential. We characterized and evaluated six (sub)species and discerned four phenotypic clusters. Significant differences were observed in leaf area, cumulative transpiration and transpiration efficiency. We confirmed a general stomatal‐driven ‘isohydric’ drought avoidance behaviour, but discovered genotypic differences in the onset and intensity of stomatal closure. We pinpointed crucial genotype‐specific soil water potentials when drought avoidance mechanisms were initiated and when stress kicked in. Differences between (sub)species were dependent on environmental conditions, illustrating the need for high‐throughput dynamic phenotyping, modelling and validation. We conclude that the banana wild relatives contain useful drought tolerance traits, emphasising the importance of their conservation and potential for use in breeding programmes.
Defective cell migration causes delayed wound healing (WH) and chronic skin lesions. Autologous micrograft (AMG) therapies have recently emerged as a new effective and affordable treatment able to ...improve wound healing capacity. However, the precise molecular mechanism through which AMG exhibits its beneficial effects remains unrevealed. Herein we show that AMG improves skin re-epithelialization by accelerating the migration of fibroblasts and keratinocytes. More specifically, AMG-treated wounds showed improvement of indispensable events associated with successful wound healing such as granulation tissue formation, organized collagen content, and newly formed blood vessels. We demonstrate that AMG is enriched with a pool of WH-associated growth factors that may provide the starting signal for a faster endogenous wound healing response. This work links the increased cell migration rate to the activation of the extracellular signal-regulated kinase (ERK) signaling pathway, which is followed by an increase in matrix metalloproteinase expression and their extracellular enzymatic activity. Overall we reveal the AMG-mediated wound healing transcriptional signature and shed light on the AMG molecular mechanism supporting its potential to trigger a highly improved wound healing process. In this way, we present a framework for future improvements in AMG therapy for skin tissue regeneration applications.
The rise in global temperature is not only affecting plant functioning directly, but is also increasing air vapour pressure deficit (VPD). The yield of banana is heavily affected by water deficit but ...so far breeding programs have never addressed the issue of water deficit caused by high VPD. A reduction in transpiration at high VPD has been suggested as a key drought tolerance breeding trait to avoid excessive water loss, hydraulic failure and to increase water use efficiency. In this study, stomatal and transpiration responses under increasing VPD at the leaf and whole-plant level of 8 wild banana (sub)species were evaluated, displaying significant differences in stomatal reactivity. Three different phenotypic groups were identified under increasing VPD. While (sub)species of group III maintained high transpiration rates under increasing VPD,
M. acuminata
ssp. e
rrans
(group I),
M. acuminata
ssp.
zebrina
(group II) and
M. balbisiana
(group II) showed the highest transpiration rate limitations to increasing VPD. In contrast to group I, group II only showed strong reductions at high VPD levels, limiting the cost of reduced photosynthesis and strongly increasing their water use efficiency.
M. acuminata
ssp.
zebrina
and
M. balbisiana
thus show the most favourable responses. This study provides a basis for the identification of potential parent material in gene banks for breeding future-proof bananas that cope better with lack of water.
Abstract
In this study, we aimed to investigate for the first time different fruit development stages in plantain banana in order gain insights into the order of appearance and dominance of specific ...enzymes and fluxes. We examined fruit development in two plantain banana cultivars during the period between 2–12 weeks after bunch emergence using high-throughput proteomics, quantification of major metabolites, and analyses of metabolic fluxes. Starch synthesis and breakdown are processes that take place simultaneously. During the first 10 weeks fruits accumulated up to 48% of their dry weight as starch, and glucose 6-phosphate and fructose were important precursors. We found a unique amyloplast transporter and hypothesize that it facilitates the import of fructose. We identified an invertase originating from the Musa balbisiana genome that would enable carbon flow back to growth and starch synthesis and maintain a high starch content even during ripening. Enzymes associated with the initiation of ripening were involved in ethylene and auxin metabolism, starch breakdown, pulp softening, and ascorbate biosynthesis. The initiation of ripening was cultivar specific, with faster initiation being particularly linked to the 1-aminocyclopropane-1-carboxylate oxidase and 4-alpha glucanotransferase disproportionating enzymes. Information of this kind is fundamental to determining the optimal time for picking the fruit in order to reduce post-harvest losses, and has potential applications for breeding to improve fruit quality.
Combined analyses of the proteomes and metabolomes of plantain banana cultivars indicate the order of appearance and dominance of specific enzymes/fluxes during fruit development.
After separation through two-dimensional gel electrophoresis (2-DE), several hundreds of individual protein abundances can be quantified in a cell population or sample tissue. However, gel-based ...proteomics has the reputation of being a slow and cumbersome art. But art is not dead! While 2-DE may no longer be the tool of choice in high-throughput differential proteomics, it is still very effective to identify and quantify protein species caused by genetic variations, alternative splicing, and/or PTMs. This chapter reviews some typical statistical exploratory and confirmatory tools available and suggests case-specific guidelines for (1) the discovery of potentially interesting protein spots, and (2) the further characterization of protein families and their possible PTMs.
The current decline in pollinators may disrupt ecosystems and ecosystem services with potentially harmful effects on nature and human society. While the importance of habitat loss and fragmentation, ...pollution and increased disease risk in driving pollinator decline has been clearly demonstrated, the impact of resource diversity is less well understood. In this study, we investigated the effect of pollen diversity and composition on reproductive success and fitness of Bombus terrestris colonies. We asked the question whether a higher plant diversity results in a more diverse diet, lower pathogen incidence and a higher colony fitness. To answer these questions, colonies of lab‐reared bumblebees were placed in species‐poor heathlands and species‐rich semi‐natural grasslands that strongly differed in plant community composition and diversity. We examined pollen loads on the bodies of foragers and identified the plant taxa present in the realized diet via DNA metabarcoding of the ITS2 marker. Liquid chromatography–mass spectrometry (LC–MS) was used to compare peptide composition of pollen samples from both habitats. Colony fitness was assessed by counting the number of sexuals produced by the colony at the end of its cycle. At the same time, colonies were examined for parasite incidence. Pollen composition and diversity on pollinators' bodies differed significantly between bees foraging in grasslands and heathlands. Concomitantly, peptide composition differed significantly between pollen samples from grasslands and heathlands. Contrary to our prediction, colonies developed significantly better in heathland sites than in grasslands. In addition, the relationship between colony fitness and pollen diversity was weak and varied between the two habitats. Pathogen incidence was very low and not affected by habitat. Overall, our results indicate that plant diversity is not necessarily a good predictor of colony fitness, and that vegetation composition and associated differences in both the quantity and quality of pollen are more important than pollen diversity per se.
Neuronal development in the human cerebral cortex is considerably prolonged compared with that of other mammals. We explored whether mitochondria influence the species-specific timing of cortical ...neuron maturation. By comparing human and mouse cortical neuronal maturation at high temporal and cell resolution, we found a slower mitochondria development in human cortical neurons compared with that in the mouse, together with lower mitochondria metabolic activity, particularly that of oxidative phosphorylation. Stimulation of mitochondria metabolism in human neurons resulted in accelerated development in vitro and in vivo, leading to maturation of cells weeks ahead of time, whereas its inhibition in mouse neurons led to decreased rates of maturation. Mitochondria are thus important regulators of the pace of neuronal development underlying human-specific brain neoteny.
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