Areas of endemism are important in biogeography because they capture facets of biodiversity not represented elsewhere. However, the scales at which they are relevant to research and conservation are ...poorly analysed. Here, we calculate weighted endemism (WE) and phylogenetic endemism (PE) separately for all birds and amphibians across the globe. We show that scale dependence is widespread for both indices and manifests across grain sizes, spatial extents and taxonomic treatments. Variations in taxonomic opinions-whether species are treated by systematic 'lumping' or 'splitting'-can profoundly affect the allocation of WE hotspots. Global patterns of PE can provide insights into complex evolutionary processes but this congruence is lost at the continental to country extents. These findings are explained by environmental heterogeneity at coarser grains, and to a far lesser extent at finer resolutions. Regardless of scale, we find widespread deficits of protection for endemism hotspots. Our study presents a framework for assessing areas for conservation that are robust to assumptions on taxonomy, spatial grain and extent.
Snakes in Africa are responsible for over 20,000 deaths annually, their indiscriminate killing. As a result, snakes are vulnerable to human population increases even at low intensities. Thus, the ...predicted doubling of Africa's population by 2050 is likely to pose a disproportionate threat to snakes compared to other taxa. Here we quantify the current and future overlap of snake distributions and human population density under three scenarios of population growth. We find that by 2050, on average, 71% of snake ranges of conservation concern will overlap with areas occupied by ten or more people per km2, a 22% increase from 2020. In addition, the number of Least Concern species with most of their range within areas with high human population density will more than double, likely increasing the number of threatened species over the next decades. Our results call for immediate policy action targeting people's perceptions and fears of snakes, and incorporating snakes directly into development and conservation plans to reduce the impact of future urban expansions across Africa.
Species occurrence records from online databases are an indispensable resource in ecological, biogeographical and palaeontological research. However, issues with data quality, especially incorrect ...geo‐referencing or dating, can diminish their usefulness. Manual cleaning is time‐consuming, error prone, difficult to reproduce and limited to known geographical areas and taxonomic groups, making it impractical for datasets with thousands or millions of records.
Here, we present CoordinateCleaner, an r‐package to scan datasets of species occurrence records for geo‐referencing and dating imprecisions and data entry errors in a standardized and reproducible way. CoordinateCleaner is tailored to problems common in biological and palaeontological databases and can handle datasets with millions of records. The software includes (a) functions to flag potentially problematic coordinate records based on geographical gazetteers, (b) a global database of 9,691 geo‐referenced biodiversity institutions to identify records that are likely from horticulture or captivity, (c) novel algorithms to identify datasets with rasterized data, conversion errors and strong decimal rounding and (d) spatio‐temporal tests for fossils.
We describe the individual functions available in CoordinateCleaner and demonstrate them on more than 90 million occurrences of flowering plants from the Global Biodiversity Information Facility (GBIF) and 19,000 fossil occurrences from the Palaeobiology Database (PBDB). We find that in GBIF more than 3.4 million records (3.7%) are potentially problematic and that 179 of the tested contributing datasets (18.5%) might be biased by rasterized coordinates. In PBDB, 1205 records (6.3%) are potentially problematic.
All cleaning functions and the biodiversity institution database are open‐source and available within the CoordinateCleaner r‐package.
A call for improving the Key Biodiversity Areas framework Farooq, Harith; Antonelli, Alexandre; Faurby, Søren
Perspectives in ecology and conservation,
January-March 2023, 2023-01-00, 2023, 2023-01-01, Letnik:
21, Številka:
1
Journal Article
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•The KBA Standards may not be scalable to all biodiversity.•If everywhere can be a Key Biodiversity Area, nowhere is “Key”.•If any area is “Key” the assessment process is solely based ...on manageability.
Eight percent of all land surface has been designated as “Key Biodiversity Areas” (KBAs). Since these areas were established based on two percent of all terrestrial species estimated to exist, we ask what would happen if we used all species on Earth to identify additional KBAs. We explore this question at a global scale by using data from 64,110 species of animals and plants to identify how many areas could qualify as KBAs under current criteria. We find that between 26% and 68% of the world’s terrestrial areas can be classified as KBAs, depending on the spatial resolution. The total area from potential KBAs increases drastically as more species are assessed, suggesting that if all species were included, all land surface could eventually meet the biological requirements for becoming a KBA. KBAs are intended to be areas that are both of biological importance and manageable, but since they lack a data-driven ranking system, the current framework largely sidesteps the biological component. We, therefore, make an urgent call for stricter criteria in the KBA methodology or alternative methodologies that allow for biologically robust area prioritization, help secure evidence-based investments, and support progress toward the targets under the new Global Biodiversity Framework.
Biodiversity loss is recognized as a grand challenge of the twenty-first century but ascertaining when a species is "lost" can be incredibly difficult-since the absence of evidence is not evidence of ...absence. This may be a relatively easy task for large and conspicuous animals, but extremely difficult for those living hidden lives or at low population sizes. We showcase this challenge by focusing on Africa's montane skink, Proscelotes aenea (Barbour & Loveridge 1928). In this study, we embarked on a year-long intensive survey to find this fossorial species in Lumbo, Northern Mozambique, the only remaining location where it may still occur but was recorded for the last time over 100 years ago. We located the species already after 20 days of intensive and targeted searching by five members of our team. The finding allowed us to describe, for the first time, details on the biology and ecology of the species, alongside photos and videos of live specimens (including a pregnant female), and to sequence DNA from the species, which we used to infer the phylogenetic placement. Our combined 12S and 16S phylogenetic analysis weakly suggest that the genus Proscelotes may not be monophyletic and therefore requires further phylogenetic work and potentially taxonomic revision. We also gathered evidence of a possible decrease in population abundance and, based on the species' ecology, we identified urbanization as a potential key threat, which could lead to the local or global extirpation of the species. We call for urgent conservation actions that help protect the future of the montane skink, and additional surveys to map its full distribution. As countries now work towards implementing the goals and targets of the Kunming-Montreal Global Biodiversity Framework, our study demonstrates the need for proper investments in biodiversity inventories and monitoring in order to halt species extinctions by 2030.
Recent biological surveys of ancient inselbergs in southern Malawi and northern Mozambique have led to the discovery and description of many species new to science, and overlapping centres of ...endemism across multiple taxa. Combining these endemic taxa with data on geology and climate, we propose the 'South East Africa Montane Archipelago' (SEAMA) as a distinct ecoregion of global biological importance. The ecoregion encompasses 30 granitic inselbergs reaching > 1000 m above sea level, hosting the largest (Mt Mabu) and smallest (Mt Lico) mid-elevation rainforests in southern Africa, as well as biologically unique montane grasslands. Endemic taxa include 127 plants, 45 vertebrates (amphibians, reptiles, birds, mammals) and 45 invertebrate species (butterflies, freshwater crabs), and two endemic genera of plants and reptiles. Existing dated phylogenies of endemic animal lineages suggests this endemism arose from divergence events coinciding with repeated isolation of these mountains from the pan-African forests, together with the mountains' great age and relative climatic stability. Since 2000, the SEAMA has lost 18% of its primary humid forest cover (up to 43% in some sites)-one of the highest deforestation rates in Africa. Urgently rectifying this situation, while addressing the resource needs of local communities, is a global priority for biodiversity conservation.
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•Using a two-tiered phylogenetic approach proves to be an efficient way to add new taxa into phylogenies.•Nothophryne is a member of Pyxicephalidae and is the sister group of ...Tomopterna.•First phylogeny to include representatives of all pyxicephalid genera.•Cryptic diversity of Nothophryne species revealed.
The phylogenetic relationships of the African mongrel frog genus Nothophryne are poorly understood. We provide the first molecular assessment of the phylogenetic position of, and diversity within, this monotypic genus from across its range—the Afromontane regions of Malawi and Mozambique. Our analysis using a two-tiered phylogenetic approach allowed us to place the genus in Pyxicephalidae. Within the family, Nothophryne grouped with Tomopterna, a hypothesis judged significantly better than alternative hypotheses proposed based on morphology. Our analyses of populations across the range of Nothophryne suggest the presence of several cryptic species, at least one species per mountain. Formal recognition of these species is pending but there is a major conservation concern for these narrowly distributed populations in an area impacted by major habitat change. The phylogenetic tree of pyxicephalids is used to examine evolution of life history, ancestral habitat, and biogeography of this group.
Species with direct uses, such as sources of food, shelter, building material and medicine tend to have more specific local names. But could the same apply for species that people fear?
To address ...this question, here we explore the behavior and perception of species diversity and dangerousness through a survey of 1037 households in nine villages in Cabo Delgado, northern Mozambique. We compare people's knowledge of snakes with that of lizards and amphibians.
We find that northern Mozambicans know four to five times more local names for snakes than for lizards and frogs, despite the local species richness of snakes being comparable to the diversity of lizards and frogs. We further find that local knowledge was on par with the academic literature regarding snakebite symptoms.
Our results suggest that fear can increase the level of specificity in naming species among indigenous communities, which could lead to biases in the mapping and protection of species that include data from citizen reports.
Nothophryne Poynton, 1963 is a monotypic genus of frog, with the nominal species N. broadleyi found only on Mount Mulanje, in southern Malawi. Recent surveys in northern Mozambique, however, have ...uncovered at least four new species associated with four inselbergs (Mount Inago, Mount Namuli, Mount Ribáuè and Taratibu Hills). Previous phylogenetic analyses using mitochondrial genes suggest that each mountain isolate has an endemic species of Nothophryne. Herein we provide a rediagnosis of the genus and comparative diagnoses of four new species based on new material. ZooBank - urn:lsid:zoobank.org:pub:19C53BF3-BA52-4CAE-933F-5BBEE0AF0457
Aim
Mountains are geographic features that provide sharp elevational gradients which can accommodate a diversity of terrestrial flora and fauna. In the face of climate change, many of these species ...are being pushed higher to escape ever‐increasing temperatures. Despite this, we have little understanding of how species distribute themselves across mountains. African mountains in particular are less studied than mountains elsewhere and the small mammal groups that inhabit them are also poorly studied when compared to other groups. In this study, we examined the responses of three functionally distinct small mammal taxonomic groups to changes in elevation across Africa.
Location
Africa.
Methods
We calculated four functional diversity metrics for 166, 97 and 153 communities of rodents, bats and shrews comprising 225, 183 and 109 species, respectively. We employed RLQ and fourth‐corner analyses to identify any associations between the functional traits of the small mammals and elevation and other climatic variables.
Results
We show that the species richness of the three taxa responded differently to increases in elevation, with only rodents showing a mid‐elevational hump. The composition of rodent and bat communities differed significantly in upland versus lowland sites, but bat communities showed far more overlap across the elevational gradient. Functional diversity metrics responded differently for each taxon highlighting the importance of using different taxonomic groups when studying elevational patterns of functional diversity.
Main Conclusions
Our study shows that functional divergence increases with elevation in all three taxa, indicating a pervasive and broadly applicable strong environmental filtering at higher elevations. Our findings suggest that species at higher elevations may be at higher risk due to specialization. These species are losing habitat due to ongoing climate change that will force them up the elevational gradient. At the same time, the human population in Africa is predicted to triple in size by the year 2100, which will also likely contribute to further habitat loss and fragmentation. As small mammals often play essential roles in ecosystems, from seed dispersal to soil aeration and predation, understanding the susceptibility of the specialization of species at higher elevations is crucial for the effective conservation and management of mountain ecosystems, especially in light of climatic change and human expansion.
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