Phosphatidylinositol 3-phosphate （PI3P） plays essential roles in vesicular trafficking, organelle biogenesis and autophagy. Two class III phosphatidylinositol 3-kinase （PI3KC3） complexes have been ...identified in mammals, the AT- G14L complex （PI3KC3-C1） and the UVRAG complex （PI3KC3-C2）. PI3KC3-C1 is crucial for autophagosome bio- genesis, and PI3KC3-C2 is involved in various membrane trafficking events. Here we report the cryo-EM structures of human PI3KC3-C1 and PI3KC3-C2 at sub-nanometer resolution. The two structures share a common L-shaped overall architecture with distinct features. EM examination revealed that PI3KC3-C1 ＂stands up＂ on lipid monolayers, with the ATG14L BATs domain and the VPS34 C-terminal domain （CTD） directly contacting the membrane. Biochemical dissection indicated that the ATG14L BATs domain is responsible for membrane anchoring, whereas the CTD of VPS34 determines the orientation. Furthermore, PI3KC3-C2 binds much more weakly than PI3KC3-C1 to both PI-containing liposomes and purified endoplasmic reticulum （ER） vesicles, a property that is specifically determined by the ATG14L BATs domain. The in vivo ER localization analysis indicated that the BATs domain was required for ER localization of PI3KC3. We propose that the different lipid binding capacity is the key factor that differentiates the functions of PI3KC3-C1 and PI3KC3-C2 in autophagy.
Sentinel-1A and Landsat 8 images have been combined in this study to map rice fields in urban Shanghai, southeast China, during the 2015 growing season. Rice grown in paddies in this area is ...characterized by wide inter-field variability in addition to being fragmented by other landuses. Improving rice classification accuracy requires the use of multi-source and multi-temporal high resolution data for operational purposes. In this regard, we first exploited the temporal backscatter of rice fields and background land-cover types at the vertical transmitted and vertical received (VV) and vertical transmitted and horizontal received (VH) polarizations of Sentinel-1A. We observed that the temporal backscatter of rice increased sharply at the early stages of growth, as opposed to the relatively uniform temporal backscatter of the other land-cover classes. However, the increase in rice backscatter is more sustained at the VH polarization, and two-class separability measures further indicated the superiority of VH over VV in discriminating rice fields. We have therefore combined the temporal VH images of Sentinel-1A with the normalized difference vegetation index (NDVI) and the modified normalized difference water index (MNDWI) derived from a single-date cloud-free Landsat 8 image. The integration of these optical indices with temporal backscatter eliminated all commission errors in the Rice class and increased overall accuracy by 5.3%, demonstrating the complimentary role of optical indices to microwave data in mapping rice fields in subtropical and urban landscapes such as Shanghai.
Cancer cells exhibit a greatly increased level of aerobic glycolysis with accumulation of lactic acid, a phenomenon known as the Warburg effect. Apparently, survival of cancer cells requires an ...elaborate system for acid resistance. L-glutamine （Gln） has long been known to be essential for cancer cell growth, which is generally thought to relate to the nutritional value of Gln as carbon and nitrogen source. On the basis of our recent finding that Gln provides acid resistance for E. coli through release of ammonia, we hypothesized that the primary role of Gin in cancer cells is to fight acid, rather than provide nutrition, through enzymatic deamidation. In this letter,
FocA is a representative member of the formate-nitrite transporter family, which transports short-chain acids in bacteria, archaea, fungi, algae and parasites. The structure and transport mechanism ...of the formate-nitrite transporter family remain unknown. Here we report the crystal structure of Escherichia coli FocA at 2.25 A resolution. FocA forms a symmetric pentamer, with each protomer consisting of six transmembrane segments. Despite a lack of sequence homology, the overall structure of the FocA protomer closely resembles that of aquaporin and strongly argues that FocA is a channel, rather than a transporter. Structural analysis identifies potentially important channel residues, defines the channel path and reveals two constriction sites. Unlike aquaporin, FocA is impermeable to water but allows the passage of formate. A structural and biochemical investigation provides mechanistic insights into the channel activity of FocA.
The urban heat island is generally conducted based on ground observations of air temperature and remotely sensing of land surface temperature (LST). Satellite remotely sensed LST has the advantages ...of global coverage and consistent periodicity, which overcomes the weakness of ground observations related to sparse distributions and costs. For human related studies and urban climatology, canopy layer urban heat island (CUHI) based on air temperatures is extremely important. This study has employed remote sensing methodology to produce monthly CUHI climatology maps during the period 2000–2013, revealing the spatiotemporal characteristics of daytime and nighttime CUHI during this period of rapid urbanization in Shanghai. Using stepwise linear regression, daytime and nighttime air temperatures at the four overpass times of Terra/Aqua were estimated based on time series of Terra/Aqua-MODIS LST and other auxiliary variables including enhanced vegetation index, normalized difference water index, solar zenith angle and distance to coast. The validation results indicate that the models produced an accuracy of 1.6–2.6 °C RMSE for the four overpass times of Terra/Aqua. The models based on Terra LST showed higher accuracy than those based on Aqua LST, and nighttime air temperature estimation had higher accuracy than daytime. The seasonal analysis shows daytime CUHI is strongest in summer and weakest in winter, while nighttime CUHI is weakest in summer and strongest in autumn. The annual mean daytime CUHI during 2000–2013 is 1.0 and 2.2 °C for Terra and Aqua overpass, respectively. The annual mean nighttime CUHI is about 1.0 °C for both Terra and Aqua overpass. The resultant CUHI climatology maps provide a spatiotemporal quantification of CUHI with emphasis on temperature gradients. This study has provided information of relevance to urban planners and environmental managers for assessing and monitoring urban thermal environments which are constantly being altered by natural and anthropogenic influences.
Long-term monitoring of regional and global environment changes often depends on the combined use of multi-source sensor data. The most widely used vegetation index is the normalized difference ...vegetation index (NDVI), which is a function of the red and near-infrared (NIR) spectral bands. The reflectance and NDVI data sets derived from different satellite sensor systems will not be directly comparable due to different spectral response functions (SRF), which has been recognized as one of the most important sources of uncertainty in the multi-sensor data analysis. This study quantified the influence of SRFs on the red and NIR reflectances and NDVI derived from 31 Earth observation satellite sensors. For this purpose, spectroradiometric measurements were performed for paddy rice grown under varied nitrogen levels and at different growth stages. The rice canopy reflectances were convoluted with the spectral response functions of various satellite instruments to simulate sensor-specific reflectances in the red and NIR channels. NDVI values were then calculated using the simulated red and NIR reflectances. The results showed that as compared to the Terra MODIS, the mean relative percentage difference (RPD) ranged from -12.67% to 36.30% for the red reflectance, -8.52% to -0.23% for the NIR reflectance, and -9.32% to 3.10% for the NDVI. The mean absolute percentage difference (APD) compared to the Terra MODIS ranged from 1.28% to 36.30% for the red reflectance, 0.84% to 8.71% for the NIR reflectance, and 0.59% to 9.32% for the NDVI. The lowest APD between MODIS and the other 30 satellite sensors was observed for Landsat5 TM for the red reflectance, CBERS02B CCD for the NIR reflectance and Landsat4 TM for the NDVI. In addition, the largest APD between MODIS and the other 30 satellite sensors was observed for IKONOS for the red reflectance, AVHRR1 onboard NOAA8 for the NIR reflectance and IKONOS for the NDVI. The results also indicated that AVHRRs onboard NOAA7-17 showed higher differences than did the other sensors with respect to MODIS. A series of optimum models were presented for remote sensing data assimilation between MODIS and other sensors.
Wind energy, as a vital renewable energy source, also plays a significant role in reducing carbon emissions and mitigating climate change. It is therefore of utmost necessity to evaluate ocean wind ...energy resources for electricity generation and environmental management. Ocean wind distribution around the globe can be obtained from satellite observations to compensate for limited in situ measurements. However, previous studies have largely ignored uncertainties in ocean wind energy resources assessment with multiple satellite data. It is against this background that the current study compares mean wind speeds (MWS) and wind power densities (WPD) retrieved from scatterometers (QuikSCAT, ASCAT) and radiometers (WindSAT) and their different combinations with National Data Buoy Center (NDBC) buoy measurements at heights of 10 m and 100 m (wind turbine hub height) above sea level. Our results show an improvement in the accuracy of wind resources estimation with the use of multiple satellite observations. This has implications for the acquisition of reliable data on ocean wind energy in support of management policies.
Oxysterols induce the migration of B-lymphocytes and dendritic cells to interfollicular regions of lymphoid tissues through binding the EBI2 (GPR183) to stimulate effective adaptive immunity and ...antibody production during infection. Aberrant EBI2 signaling is implicated in inflammatory bowel disease, sclerosis, and infectious disease. Here, we report the cryo-EM structures of an EBI2-G
signaling complex with its endogenous agonist 7α,25-OHC and that of an inactive EBI2 bound to the inverse agonist GSK682753A. These structures reveal an agonist binding site for the oxysterol and a potential ligand entrance site exposed to the lipid bilayer. Mutations within the oxysterol binding site and the Gα
interface attenuate G protein signaling and abolish oxysterol-mediated cell migration indicating that G protein signaling directly involves in the oxysterol-EBI2 pathway. Together, these findings provide new insight into how EBI2 is activated by an oxysterol ligand and will facilitate the development of therapeutic approaches that target EBI2-linked diseases.
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