Ants are one of the most ecologically and numerically dominant group of terrestrial organisms with most species diversity currently found in tropical climates. Several explanations for the disparity ...of biological diversity in the tropics compared to temperate regions have been proposed including that the tropics may act as a "museum" where older lineages persist through evolutionary time or as a "cradle" where new species continue to be generated. We infer the molecular phylogenetic relationships of 295 ant specimens including members of all 21 extant subfamilies to explore the evolutionary diversification and biogeography of the ants. By constraining the topology and age of the root node while using 45 fossils as minimum constraints, we converge on an age of 139–158 Mya for the modern ants. Further diversification analyses identified 10 periods with a significant change in the tempo of diversification of the ants, although these shifts did not appear to correspond to ancestral biogeographic range shifts. Likelihood-based historical biogeographic reconstructions suggest that the Neotropics were important in early ant diversification (e.g., Cretaceous). This finding coupled with the extremely high-current species diversity suggests that the Neotropics have acted as both a museum and cradle for ant diversity.
Ant–plant interactions are diverse and abundant and include classic models in the study of mutualism and other biotic interactions. By estimating a time-scaled phylogeny of more than 1,700 ant ...species and a time-scaled phylogeny of more than 10,000 plant genera, we infer when and how interactions between ants and plants evolved and assess their macroevolutionary consequences. We estimate that ant–plant interactions originated in the Mesozoic, when predatory, ground-inhabiting ants first began foraging arboreally. This served as an evolutionary precursor to the use of plant-derived food sources, a dietary transition that likely preceded the evolution of extrafloral nectaries and elaiosomes. Transitions to a strict, plant-derived diet occurred in the Cenozoic, and optimal models of shifts between strict predation and herbivory include omnivory as an intermediate step. Arboreal nesting largely evolved from arboreally foraging lineages relying on a partially or entirely plant-based diet, and was initiated in the Mesozoic, preceding the evolution of domatia. Previous work has suggested enhanced diversification in plants with specialized ant-associated traits, but it appears that for ants, living and feeding on plants does not affect ant diversification. Together, the evidence suggests that ants and plants increasingly relied on one another and incrementally evolved more intricate associations with different macroevolutionary consequences as angiosperms increased their ecological dominance.
A likely important feature of the poorly understood aerosol‐cloud interactions over the Southern Ocean (SO) is the dominant role of sea spray aerosol, versus terrestrial aerosol. Ice nucleating ...particles (INPs), or particles required for heterogeneous ice nucleation, present over the SO have not been studied in several decades. In this study, boundary layer aerosol properties and immersion freezing INP number concentrations (nINPs) were measured during a ship campaign that occurred south of Australia (down to 53°S) in March–April 2016. Ocean surface chlorophyll a concentrations ranged from 0.11 to 1.77 mg/m3, and nINPs were a factor of 100 lower than historical surveys, ranging from 0.38 to 4.6 m−3 at −20 °C. The INP population included organic heat‐stable material, with contributions from heat‐labile material. Lower INP source potentials of SO seawater samples compared to Arctic seawater were consistent with lower ice nucleating site densities in this study compared to north Atlantic air masses.
Plain Language Summary
The Southern Ocean is known for a prevalence of clouds that contain both liquid and ice, which are one of the most poorly understood cloud regimes in the climate system. A large gap in understanding important processes in these clouds is a lack of knowledge regarding particles (e.g., sea spray) required for forming ice crystals, termed ice nucleating particles. In a ship‐based monthlong field study, several instruments were deployed in efforts to characterize the ice nucleating particles present over the Southern Ocean for the first time in over four decades. Abundances of ice nucleating particles throughout the voyage were extremely low compared to other ocean regions, and concentrations were 2 orders of magnitude lower than the most recent survey conducted in the 1970s. We report that the ocean‐derived ice nucleating particles observed in this study were organic in nature, supporting a hypothesized link between ice nucleating particles and organic particles associated with phytoplankton blooms. The data from this study provide a desperately needed benchmark for constraining the number of ice crystals that may form in the remote and poorly understood clouds occurring over the Southern Ocean.
Key Points
Number concentrations of ice nucleating particles over the Southern Ocean in March 2016 were a factor of 100 lower than historical surveys
The ice nucleating particle source strength of Southern Ocean seawater was lower than previous measurements in northern hemisphere seawater
Ice nucleation site densities were lower over the Southern Ocean compared to measurements of pristine air masses from other ocean basins
Reduced-representation genome sequencing represents a new source of data for systematics, and its potential utility in interspecific phylogeny reconstruction has not yet been explored. One approach ...that seems especially promising is the use of inexpensive short-read technologies (e.g., Illumina, SOLiD) to sequence restriction-site associated DNA (RAD)--the regions of the genome that flank the recognition sites of restriction enzymes. In this study, we simulated the collection of RAD sequences from sequenced genomes of different taxa (Drosophila, mammals, and yeasts) and developed a proof-of-concept workflow to test whether informative data could be extracted and used to accurately reconstruct "known" phylogenies of species within each group. The workflow consists of three basic steps: first, sequences are clustered by similarity to estimate orthology; second, clusters are filtered by taxonomic coverage; and third, they are aligned and concatenated for "total evidence" phylogenetic analysis. We evaluated the performance of clustering and filtering parameters by comparing the resulting topologies with well-supported reference trees and we were able to identify conditions under which the reference tree was inferred with high support. For Drosophila, whole genome alignments allowed us to directly evaluate which parameters most consistently recovered orthologous sequences. For the parameter ranges explored, we recovered the best results at the low ends of sequence similarity and taxonomic representation of loci; these generated the largest supermatrices with the highest proportion of missing data. Applications of the method to mammals and yeasts were less successful, which we suggest may be due partly to their much deeper evolutionary divergence times compared to Drosophila (crown ages of approximately 100 and 300 versus 60 Mya, respectively). RAD sequences thus appear to hold promise for reconstructing phylogenetic relationships in younger clades in which sufficient numbers of orthologous restriction sites are retained across species.
Plant-herbivore interactions reciprocally influence species' evolutionary trajectories. These interactions have led to many physical and chemical defenses across the plant kingdom. Some plants have ...even evolved indirect defense strategies to outsource their protection to ant bodyguards by bribing them with a sugary reward (nectar). Identifying the evolutionary processes underpinning these indirect defenses provide insight into the evolution of plant-animal interactions. Using a cross-kingdom, phylogenetic approach, we examined the convergent evolution of ant-guarding nectaries across ferns and flowering plants. Here, we discover that nectaries originated in ferns and flowering plants concurrently during the Cretaceous, coinciding with the rise of plant associations in ants. While nectaries in flowering plants evolved steadily through time, ferns showed a pronounced lag of nearly 100 My between their origin and subsequent diversification in the Cenozoic. Importantly, we find that as ferns transitioned from the forest floor into the canopy, they secondarily recruited ant bodyguards from existing ant-angiosperm relationships.
Pheidole is currently the most species rich genus of ants in the world, with many taxa still awaiting description. In this study, I reconstruct the phylogeny of Pheidole using molecular characters ...from three mitochondrial genes and two nuclear genes for ∼140 species. The phylogenetic relationships of Pheidole are investigated with special interest in understanding factors that may have led to their remarkable diversity. The results presented here establish a framework for understanding the explosive radiation of this group by providing (1) a phylogenetic estimate, and (2) a comparative analysis of life history traits that are likely to have been important in the diversification of the group. In all analyses, Pheidole is recovered as a monophyletic lineage, and molecular clock estimates infer an age of 58.4–61.2million years ago (Ma) for crown group members of the genus. Using an estimate of diversification rate, it appears that Pheidole has undergone 0.108–0.103 speciation events per million years. Previous hypotheses of species groups were largely not upheld in the analyses presented here. Workers of the genus Pheidole are dimorphic with a minor and major (soldier) subcaste. A third subcaste of super majors is known in eight species of Pheidole and this trait was found to have arisen multiple times throughout the phylogeny. Seed harvesting is common among species of the genus and is thought to be one of the factors leading to the diversification of the group, but additional data will be required to further test this hypothesis. To address biogeographic questions on the origin of the genus, both New and Old World species were included in these analyses, and the results suggest that Pheidole is New World in origin with a possible single introduction into the Old World.
This study introduces an analytical model aiming at predicting the tonal acoustic sources generated and radiated by the rotor–stator interaction in a fan stage. This model is able to cope with ...complex three-dimensional stator geometries and it fully accounts for cascade effects, characteristic of modern fan stages. It is based on a proper description of the rotor wake coupled with an analytic cascade response function and with an acoustic analogy. The proposed model is validated for the first time against acoustic sources and sound power measurements, on the Advanced Noise Control Fan from NASA. On this configuration representative of an actual fan stage, the model is shown to predict tonal sources and powers accurately, in function of the rotational velocity and of the stator-vane count. Another realistic configuration, namely the low-pressure CME2 research compressor, is then considered in order to demonstrate the suitability of the model to be used as a design tool in an industrial context. A parametric study concerning both the stator vane sweep and lean angles is performed on this rotor–stator stage. The model produces predictions consistent with studies from literature, quantifying the effectiveness of swept and leaned vanes as a tonal noise reduction mechanism. This parametric study allows defining an optimal stator design for minimal noise emission.
Systemic reactivation of herpesviruses may occur in intensive care unit (ICU) patients and is associated with morbidity and mortality. Data on severe Coronavirus disease-19 (COVID-19) and concomitant ...reactivation of herpesviruses are lacking.
We selected patients admitted to ICU for confirmed COVID-19 who underwent systematic testing for Epstein-Barr virus (EBV), cytomegalovirus (CMV) and human-herpes virus-6 (HHV-6) DNAemia while in the ICU. We retrospectively analysed frequency, timing, duration and co-occurrence of viral DNAemia.
Thirty-four patients were included. Viremia with EBV, CMV, and HHV-6 was detected in 28 (82%), 5 (15%), and 7 (22%) patients, respectively. EBV reactivation occurred early after ICU admission and was associated with longer ICU length-of-stay.
While in the ICU, critically ill patients with COVID-19 are prone to develop reactivations due to various types of herpesviruses.
Maternally transmitted bacteria have been important players in the evolution of insects and other arthropods, affecting their nutrition, defense, development, and reproduction. Wolbachia are the best ...studied among these and typically the most prevalent. While several other bacteria have independently evolved a heritable lifestyle, less is known about their host ranges. Moreover, most groups of insects have not had their heritable microflora systematically surveyed across a broad range of their taxonomic diversity. To help remedy these shortcomings we used diagnostic PCR to screen for five groups of heritable symbionts-Arsenophonus spp., Cardinium hertigii, Hamiltonella defensa, Spiroplasma spp., and Wolbachia spp.-across the ants and lepidopterans (focusing, in the latter case, on two butterfly families-the Lycaenidae and Nymphalidae). We did not detect Cardinium or Hamiltonella in any host. Wolbachia were the most widespread, while Spiroplasma (ants and lepidopterans) and Arsenophonus (ants only) were present at low levels. Co-infections with different Wolbachia strains appeared especially common in ants and less so in lepidopterans. While no additional facultative heritable symbionts were found among ants using universal bacterial primers, microbes related to heritable enteric bacteria were detected in several hosts. In summary, our findings show that Wolbachia are the dominant heritable symbionts of ants and at least some lepidopterans. However, a systematic review of symbiont frequencies across host taxa revealed that this is not always the case across other arthropods. Furthermore, comparisons of symbiont frequencies revealed that the prevalence of Wolbachia and other heritable symbionts varies substantially across lower-level arthropod taxa. We discuss the correlates, potential causes, and implications of these patterns, providing hypotheses on host attributes that may shape the distributions of these influential bacteria.
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