Including resilience in the breeding objective of dairy cattle is gaining increasing attention, primarily as anticipated challenges to production systems, such as climate change, may make some ...perturbations more difficult to moderate at the farm level. Consequently, the underlying biological mechanisms by which resilience is achieved are likely to become an important part of the system itself, increasing value on the animal's ability to be unperturbed by variable production circumstances, or to quickly return to pre-perturbed levels of productivity and health. However, because the value of improving genetic traits to a system is usually based on known profit functions or bioeconomic models linked to current production conditions, it can be difficult to define longer-term value, especially under uncertain future production circumstances and where nonmonetary values may be progressively more important. We present the novel application of a discrete choice experiment, used to investigate potential antagonisms in the values of genetic improvements for 8 traits to dairy cattle system stakeholders in Europe when the production goal was either efficiency or resilience. A latent class model was used to identify heterogeneous preferences within each production goal, and postestimation was used to identify associations between these preferences and sociodemographic characteristics of respondents. Results suggested 3 distinct latent preference classes for each production goal. For the efficiency goal, yield and feed efficiency traits were generally highly valued, whereas for the resilience goal, health and robustness traits were generally highly valued. In both cases, these traits generally carried a low value in the other production scenario. Overall, in both scenarios, longevity was highly valued; however, the value of this trait in terms of resilience will depend on phenotyping across diverse environments to sufficiently capture performance under various anticipated system challenges. Additionally, results showed significant associations between membership of latent preference classes with education level and profession. In conclusion, as resilience becomes increasingly important, it is likely that a continued reliance on the short-term economic value of traits alone will lead decision makers to misrepresent the importance of some traits, including those with substantial contextual values in terms of resilience.
Genetic improvement of livestock is a particularly effective technology, producing permanent and cumulative changes in performance. This paper highlights some of the options for including mitigation ...in livestock breeding schemes, focusing on ruminant species, and details three routes through which genetic improvement can help to reduce emissions per kg product via: (i) improving productivity and efficiency, (ii) reducing wastage in the farming system and (iii) directly selecting on emissions, if or when these are measurable. Selecting on traits that improve the efficiency of the system (e.g. residual feed intake, longevity) will have a favourable effect on the overall emissions from the system. Specific examples of how genetic selection will have a favourable effect on emissions for UK dairy systems are described. The development of breeding schemes that incorporate environmental concerns is both desirable and possible. An example of how economic valuation of public good outcomes can be incorporated into UK dairy selection indices is given. This paper focuses on genetic selection tools using, on the whole, currently available traits and tools. However, new direct and indirect measurement techniques for emissions will improve the potential to reduce emissions by genetic selection. The complexities of global forces on defining selection objectives are also highlighted.
•Can random regression models be applied to growth in sheep with few mature records?•Can models with constrained parameters produce valid genetic values?•Does a multitrait validation procedure ...support the chosen parameter correlation?•Models with constrained parameters at 0.5 results in heritability values from 0.18 to 0.5.•This research may extend genetic evaluation to more of the animal production sector.
Random regression modelling has been used across multiple animal species to model longitudinal data. The random regression model for growth accounts for the genetic correlation between measures of the same trait over time and the wide environmental variability in growth, but this requires adequate weight records across the age range. However, contemporary management practices in sheep in the United Kingdom generally focus on growing lambs and neglect mature weight recordings. This study examined modelling strategies for growth data in Suffolk and Charollais sheep, provided by the Agriculture and Horticulture Development Board, with polynomial random regression modelling with many early life weight recordings but limited weight recordings in mature animals. Two methods were employed to model the data. In Method A, missing mature weight records were predicted for those animals that did not have a recorded mature weight. The animals were sorted into groups based on the identity of their sires and the year in which the animal was born. Mature weight values were predicted within each group with a multiple regression model. The dataset, including predicted values, was analysed with random regression models using polynomials and simple linear regression for animal and permanent environmental (PE) effects. In Method B, the dataset with missing mature weight records was analysed using a random linear regression animal model with random animal and PE effects. Due to problems of convergence because the parameters were close to the boundary space, fixing the correlation between the intercept and slope of the Legendre polynomial at different levels was investigated. The heritability values resulting from the model with a fixed correlation between intercept and slope parameters at 0.5 for the Suffolk dataset resulted in heritability values ranging from 0.2 to 0.5 from 1 to 619 days of age. Corresponding estimates for the Charollais dataset ranged from 0.18 to 0.49 from 1 to 640 days of age. For the Suffolk data, the genetic correlations ranged from 1.00 to 0.08 between weight at day 1 to weight at day 619, while for the Charollais, the correlations ranged from 1.00 to 0.05 from 1 to 640 days of age. Validation procedures were undertaken using a multitrait approach to examine the estimated breeding values when the correlation between the intercept and slope are fixed at different levels. The results indicated that fixing the correlation at 0.5 gave the most appropriate estimates for the Suffolk and Charollais datasets.
•Systematic review of 84 preference elicitation studies for apt breeding objectives.•Includes aggregation of partial rankings for cattle traits from relevant studies.•All approaches are especially ...useful for capturing non-market values of traits.•Methods that derive scaled values can be used directly to formulate selection tools.•Other methods useful for preliminary steps or broader study of breeding objectives.
Breeding objectives of livestock and other agricultural species are usually profit maximising. The selection emphasis placed on specific traits to achieve a breeding objective is often informed by the financial value of a trait to a farm system. However, there are alternative, and complementary approaches to defining both the breeding objective and the selection emphasis placed on traits that are included in associated selection tools. These are based on the preferences of stakeholders, which are often heterogeneous and include broader values and motivations than profit. In this regard, stated preference methods are useful when considering traits that have either no discernible market value or whose value is not fully transferred via the market. Such approaches can guide more appropriate breeding decisions that are amenable to changing societal values, for example with reduced negative environmental externalities. However, while stated preference methods offer promising conceptualisations of value in genetic improvement programmes, there is still a substantial knowledge gap in terms of the current state of research and a catalogue of publications to date. This paper reviews publications of stated preference approaches in the field of livestock breeding (and some relevant crop breeding examples), providing a knowledge base of published applications and promoting their continued development and implementation towards the formulation of appropriate breeding objectives and selection indices. A systematic review of 84 peer-reviewed publications and an aggregate ranking of traits for the most commonly studied subject (cattle) reveals uncertainty in preference estimates which may be driven by (i) a diverse set of non-standardised methodologies, (ii) common oversights in the selection, inclusion and description of traits, and (iii) inaccurate representations of the respondent population. We discuss key considerations to help overcome these limitations, including avoiding methodological confinement to a disciplinary silo and reducing complexity so that the values of broader respondent groups may be accounted for.
This study compared the environmental impact of a range of dairy production systems in terms of their global warming potential (GWP, expressed as carbon dioxide equivalents, CO2-eq.) and associated ...land use, and explored the efficacy of reducing said impact. Models were developed using the unique data generated from a long-term genetic line × feeding system experiment. Holstein-Friesian cows were selected to represent the UK average for milk fat plus protein production (control line) or were selected for increased milk fat plus protein production (select line). In addition, cows received a low forage diet (50% forage) with no grazing or were on a high forage (75% forage) diet with summer grazing. A Markov chain approach was used to describe the herd structure and help estimate the GWP per year and land required per cow for the 4 alternative systems and the herd average using a partial life cycle assessment. The CO2-eq. emissions were expressed per kilogram of energy-corrected milk (ECM) and per hectare of land use, as well as land required per kilogram of ECM. The effects of a phenotypic and genetic standard deviation unit improvement on herd feed utilization efficiency, ECM yield, calving interval length, and incidence of involuntary culling were assessed. The low forage (nongrazing) feeding system with select cows produced the lowest CO2-eq. emissions of 1.1 kg/kg of ECM and land use of 0.65m2/kg of ECM but the highest CO2-eq. emissions of 16.1t/ha of the production systems studied. Within the herd, an improvement of 1 standard deviation in feed utilization efficiency was the only trait of those studied that would significantly reduce the reliance of the farming system on bought-in synthetic fertilizer and concentrate feed, as well as reduce the average CO2-eq. emissions and land use of the herd (both by about 6.5%, of which about 4% would be achievable through selective breeding). Within production systems, reductions in CO2-eq. emissions per kilogram of ECM and CO2-eq. emissions per hectare were also achievable by an improvement in feed utilization. This study allowed development of models that harness the biological trait variation in the animal to improve the environmental impact of the farming system. Genetic selection for efficient feed use for milk production according to feeding system can bring about reductions in system nutrient requirements, CO2-eq. emissions, and land use per unit product.
An online survey on the state of existing dairy data, dairy improvement infrastructure and human capacity in sub-Saharan Africa (SSA) was undertaken with the aim of assessing whether the state of ...existing animal recording, dairy improvement methods and key issues facing dairy production together with means of addressing the issues differ among countries and regions of SSA. Respondents comprised experts and practitioners in livestock production and genetic resources from research institutes, animal breeding companies, universities, non-governmental organisations and government agricultural ministries. The main dairy farming system in which the respondents were involved was mixed crop-livestock system (30.2%), and this was mainly practised in the private land tenure system (46.3%). Data were analysed using linear model and paired Student
t
test in R software package. Respondents identified key issues affecting dairy production as poor genetic assessment of imported exotic breeds and crosses in Africa (62.3%), fluctuations in milk prices within both the formal and informal markets (50.9%), no comprehensive sire ranking systems (39.6%), housing and health management regimes which adversely affect milk yield (32.1%), poor market networks for dairy products (25.5%), poor feeding (13.3%), inadequate genetic technologies (9.4%) and poor animal performance recording systems (9.4%). Respondents emphasised the need for updated breeding policies, sire ranking systems, adequate farm management systems, capacity building, across-country collaborations and joint genetic assessments of dairy breeds found in sub-Saharan Africa. The current situation of dairy production though similar for the different countries, differed in order of emphasis and magnitude across the countries and regions in sub-Saharan Africa.
The aim of this study was to assess the on-line implementation of visible and near infrared reflectance (Vis-NIR) spectroscopy as an early predictor of beef quality traits, by direct application of a ...fibre-optic probe to the muscle immediately after exposing the meat surface in the abattoir. Samples from
M.
longissimus thoracis from 194 heifers and steers were scanned at quartering 48
h postmortem over the Vis-NIR spectral range from 350 to 1800
nm. Thereafter, samples from
M.
longissimus thoracis
et lumborum were analysed for colour (
L
∗,
a
∗,
b
∗; 48
h postmortem), cooking loss (14 days postmortem), instrumental texture (Volodkevitch, 10 days aged meat; slice shear force, 3 and 14 days aged meat) and sensory characteristics. Vis-NIR calibrations, tested by cross-validation, showed high predictability for
L
∗,
a
∗ and
b
∗ (
R
2
=
0.86, 0.86 and 0.91; SE
CV
=
0.96, 0.95 and 0.69, respectively). The accuracy of Vis-NIR to estimate cooking loss and instrumental texture ranged from
R
2
=
0.31 to 0.54, suggesting relatively low prediction ability. Sensory characteristics assessed on 14 days aged meat samples showed
R
2 in the range from 0.21 (juiciness) to 0.59 (flavour). Considering the subjective assessment of sensory characteristics the correlations of Vis-NIR measurements and several meat quality traits in the range from 0.46 to 0.95 support the use of on-line Vis-NIR in the abattoir. Improvement of predictability was achieved if only extreme classes of meat characteristics have to be predicted by Vis-NIR spectroscopy.
Risk factors associated with voluntary and involuntary culling within a Holstein-Friesian dairy cow research herd were identified. Data were studied from 3498 completed lactations from the Langhill ...Holstein-Friesian dairy herd between January 1990 and June 2008. During this period the cows were based on two different farms in Scotland. The culling rate of the milking herd was approximately 25 per cent per annum. Approximately 68 per cent of cows culled were classified as involuntary. The association between different risk factors and the incidence of culling was investigated using a general linear mixed model. Of the 838 cows culled, 59 per cent were culled before the fourth lactation. Culling was associated with cows that had an assisted calving (P<0.01), aborted (P<0.01) and/or suffered from mastitis (P<0.05). Cows that were culled were also more likely to be older cows (P<0.01), have a low number of milking days (P<0.001) and/or a greater number of days from calving to conception (P<0.01). Culling was also associated with conception failure (r=0.752, P<0.001). Further work might help reduce the number of animals culled involuntarily, by identifying key factors associated with the incidence of an assisted calving, abortion and mastitis, and improving milking and fertility performance using detailed data from the Langhill herd.
This study assessed the feasibility of across-country genetic evaluation of dairy cattle in sub-Saharan Africa where data on livestock production are scarce. Genetic parameters were estimated for the ...305-day milk yield in the first lactation and across five lactations, for age at first calving and for interval between first and second calving. Estimated breeding values of individual animals for these traits were calculated. There were records from 2 333, 25 208, and 5 929 Holstein cows in Kenya, South Africa, and Zimbabwe, and 898 and 65134 Jersey cows from Kenya and South Africa. Genetic gain from sire selection within and across countries. was predicted Genetic links between countries were determined from sires with daughters that had records in two or more countries, and from common ancestral sires across seven generations on both the maternal and paternal sides of the pedigree. Each country was treated as a trait in the across-country evaluation. The results showed that genetic variance and heritability were not always estimable within country, but were significantly different from zero in the across-country evaluation. In all three countries, there was greater genetic gain in all traits from an across-country genetic evaluation owing to greater accuracy of selection compared with within country. Kenya stood to benefit most from an across-country evaluation, followed by Zimbabwe, then South Africa. An across-country breeding programme using joint genetic evaluation would be feasible, provided that there were genetic links across countries, and would provide a platform for accelerated genetic progress through selection and germplasm exchange between sub-Saharan African countries.
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