The light microscope has long been used to document the localization of fluorescent molecules in cell biology research. With advances in digital cameras and the discovery and development of ...genetically encoded fluorophores, there has been a huge increase in the use of fluorescence microscopy to quantify spatial and temporal measurements of fluorescent molecules in biological specimens. Whether simply comparing the relative intensities of two fluorescent specimens, or using advanced techniques like Förster resonance energy transfer (FRET) or fluorescence recovery after photobleaching (FRAP), quantitation of fluorescence requires a thorough understanding of the limitations of and proper use of the different components of the imaging system. Here, I focus on the parameters of digital image acquisition that affect the accuracy and precision of quantitative fluorescence microscopy measurements.
Physical Properties of 15 Quasars at z 6.5 Mazzucchelli, C.; Bañados, E.; Venemans, B. P. ...
Astrophysical journal/The Astrophysical journal,
11/2017, Letnik:
849, Številka:
2
Journal Article
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Quasars are galaxies hosting accreting supermassive black holes; due to their brightness, they are unique probes of the early universe. To date, only a few quasars have been reported at (<800 Myr ...after the big bang). In this work, we present six additional quasars discovered using the Pan-STARRS1 survey. We use a sample of 15 quasars to perform a homogeneous and comprehensive analysis of this highest-redshift quasar population. We report four main results: (1) the majority of quasars show large blueshifts of the broad C iv λ1549 emission line compared to the systemic redshift of the quasars, with a median value ∼3× higher than a quasar sample at ; (2) we estimate the quasars' black hole masses ( (0.3-5) × 109 M ) via modeling of the Mg ii λ2798 emission line and rest-frame UV continuum and find that quasars at high redshift accrete their material (with ) at a rate comparable to a luminosity-matched sample at lower redshift, albeit with significant scatter (0.4 dex); (3) we recover no evolution of the Fe ii/Mg ii abundance ratio with cosmic time; and (4) we derive near-zone sizes and, together with measurements for quasars from recent work, confirm a shallow evolution of the decreasing quasar near-zone sizes with redshift. Finally, we present new millimeter observations of the C ii 158 m emission line and underlying dust continuum from NOEMA for four quasars and provide new accurate redshifts and C ii/infrared luminosity estimates. The analysis presented here shows the large range of properties of the most distant quasars.
It is now well-established that early life adversity (ELA) predisposes individuals to develop several neuropsychiatric conditions, including anxiety disorders, and major depressive disorder. However, ...ELA is a very broad term, encompassing multiple types of negative childhood experiences, including physical, sexual and emotional abuse, physical and emotional neglect, as well as trauma associated with chronic illness, family separation, natural disasters, accidents, and witnessing a violent crime. Emerging literature suggests that in humans, different types of adverse experiences are more or less likely to produce susceptibilities to certain conditions that involve affective dysfunction. To investigate the driving mechanisms underlying the connection between experience and subsequent disease, neuroscientists have developed several rodent models of ELA, including pain exposure, maternal deprivation, and limited resources. These studies have also shown that different types of ELA paradigms produce different but somewhat overlapping behavioral phenotypes. In this review, we first investigate the types of ELA that may be driving different neuropsychiatric outcomes and brain changes in humans. We next evaluate whether rodent models of ELA can provide translationally relevant information regarding links between specific types of experience and changes in neural circuits underlying dysfunction.
The Pan-STARRS1 Database and Data Products Flewelling, H. A.; Magnier, E. A.; Chambers, K. C. ...
The Astrophysical journal. Supplement series,
11/2020, Letnik:
251, Številka:
1
Journal Article
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Abstract
This paper describes the organization of the database and the catalog data products from the Pan-STARRS1 3
π
Steradian Survey. The catalog data products are available in the form of an ...SQL-based relational database from MAST, the Mikulski Archive for Space Telescopes at STScI. The database is described in detail, including the construction of the database, the provenance of the data, the schema, and how the database tables are related. Examples of queries for a range of science goals are included.
We review findings from the last decade of research on the effects of disasters, concentrating on three important themes: the differences between the recovery of places versus people, the need to ...differentiate between short- and long-term recovery trajectories, and the changing role of government and how it has exacerbated inequality in recovery and engendered feedback loops that create greater vulnerability. We reflect the focus of the majority of sociological studies on disasters by concentrating our review on studies in the United States, but we also include studies on disasters throughout the world if they contribute to our empirical and theoretical understanding of disasters and their impacts. We end with a discussion of the inevitability of more severe disasters as climate change progresses and call on social scientists to develop new concepts and to use new methods to study these developments.
Pan-STARRS Photometric and Astrometric Calibration Magnier, Eugene. A.; Schlafly, Edward. F.; Finkbeiner, Douglas P. ...
The Astrophysical journal. Supplement series,
11/2020, Letnik:
251, Številka:
1
Journal Article
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Abstract
We present the details of the photometric and astrometric calibration of the Pan-STARRS1 3
π
Survey. The photometric goals were to reduce the systematic effects introduced by the camera and ...detectors, and to place all of the observations onto a photometric system with consistent zero-points over the entire area surveyed, the ≈30,000 deg
2
north of
δ
= −30°. Using external comparisons, we demonstrate that the resulting photometric system is consistent across the sky to between 7 and 12.4 mmag depending on the filter. For bright stars, the systematic error floor for individual measurements is (
σ
g
,
σ
r
,
σ
i
,
σ
z
,
σ
y
) = (14, 14, 15, 15, 18) mmag. The astrometric calibration compensates for similar systematic effects so that positions, proper motions, and parallaxes are reliable as well. The bright-star systematic error floor for individual astrometric measurements is 16 mas. The Pan-STARRS Data Release 2 (DR2) astrometric system is tied to the Gaia DR1 coordinate frame with a systematic uncertainty of ∼5 mas.
The Pan-STARRS Data-processing System Magnier, Eugene A.; Chambers, K. C.; Flewelling, H. A. ...
The Astrophysical journal. Supplement series,
11/2020, Letnik:
251, Številka:
1
Journal Article
Recenzirano
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Abstract
The Pan-STARRS data-processing system is responsible for the steps needed to downloaded, archive, and process all images obtained by the Pan-STARRS telescopes, including real-time detection ...of transient sources such as supernovae and moving objects including potentially hazardous asteroids. With a nightly data volume of up to 4 TB and an archive of over 4 PB of raw imagery, Pan-STARRS is solidly in the realm of Big Data astronomy. The full data-processing system consists of several subsystems covering the wide range of necessary capabilities. This article describes the Image Processing Pipeline and its connections to both the summit data systems and the outward-facing systems downstream. The latter include the Moving Object Processing System (MOPS) and the public database: the Published Science Products Subsystem.
In 2014, the Nobel Prize in Chemistry was awarded to three scientists who have made groundbreaking contributions to the field of superresolution (SR) microscopy (SRM). The first commercial SR ...microscope came to market a decade earlier, and many other commercial options have followed. As commercialization has lowered the barrier to using SRM and the awarding of the Nobel Prize has drawn attention to these methods, biologists have begun adopting SRM to address a wide range of questions in many types of specimens. There is no shortage of reviews on the fundamental principles of SRM and the remarkable achievements made with these methods. We approach SRM from another direction: we focus on the current practical limitations and compromises that must be made when designing an SRM experiment. We provide information and resources to help biologists navigate through common pitfalls in SRM specimen preparation and optimization of image acquisition as well as errors and artifacts that may compromise the reproducibility of SRM data.
Images generated by a microscope are never a perfect representation of the biological specimen. Microscopes and specimen preparation methods are prone to error and can impart images with unintended ...attributes that might be misconstrued as belonging to the biological specimen. In addition, our brains are wired to quickly interpret what we see, and with an unconscious bias toward that which makes the most sense to us based on our current understanding. Unaddressed errors in microscopy images combined with the bias we bring to visual interpretation of images can lead to false conclusions and irreproducible imaging data. Here we review important aspects of designing a rigorous light microscopy experiment: validation of methods used to prepare samples and of imaging system performance, identification and correction of errors, and strategies for avoiding bias in the acquisition and analysis of images.