ABSTRACT
Genomic selection offers great potential for increasing the rate of genetic improvement in plant breeding programs. This research used simulation to evaluate the effectiveness of different ...strategies for genotyping and phenotyping to enable genomic selection in early generation individuals (e.g., F2) in breeding programs involving biparental or similar (e.g., backcross or top cross) populations. By using phenotypes that were previously collected in other biparental populations, selection decisions could be made without waiting for phenotypes that pertain directly to the selection candidate to be collected, a process that would take at least three growing seasons. If these phenotypes were collected in biparental populations that were closely related to the selection candidates, only a small number of markers (e.g., 200–500) and a small number of phenotypes (e.g., 1000) were needed to achieve effective accuracy of estimated breeding values. If these phenotypes were collected in biparental populations that were not closely related to the selection candidates, as many as 10,000 markers and 5000 to 20,000 phenotypes were needed. Increasing marker density beyond 10,000 markers did not show benefit and in some scenarios reduced the accuracy of prediction. This study provides a guide, enabling resource allocation to be optimized between genotyping and phenotyping investment dependent on the population under development.
Dietary trans fatty acids (TFA) from industrial partial hydrogenation continue to occupy the attention of health and regulatory authorities, prompting renewed recommendations and regulations around ...the world. Partial hydrogenation of liquid oils was widely used because it increases the oxidative stability and plasticity of vegetable oils. The development of high oleic (HO) oils appeared as an efficient and healthy strategy to replace partially hydrogenated vegetable oils. At present, the main sources of HO oils are the HO varieties of sunflower, canola, and soybean, covering almost the entire market. Although all these HO crops show oleic acid contents higher than 70%, they can be differentiated by their fatty acid profiles. Recent clinical evidence suggests that polyunsaturated content should also be considered since its intake has been associated with coronary heart disease. Comparison of the fatty acid compositions, places HO sunflower as the best option in terms of oxidative stability and beneficial effects on the health of consumers.
•Genotypes producing oils with oleic acid >90% in any environment are demanded.•The sunflower isogenic lines were non-mutated (traditional) or mutated (Pervenets and NM1).•Plants were exposed to ...minimum night temperatures from 11.8 to 23.2°C.•NM1 showed oleic acid percentages >91.3 and more stable concentrations than Pervenets.•Ultra-high oleic quality was obtained in NM1 independently of growing temperature conditions.
The oil industry demands sunflower oils with high oleic acid content. New varieties producing high oleic oils independently of the growing environment are needed as growers could receive an extra prime for offering them. Oil fatty acid composition of high oleic sunflower hybrids currently available carrying the Pervenets mutation could however be affected by the temperature during the grain filling period. A new high oleic mutation has been obtained to attain oils with ultra-high oleic levels (>90%oleic acid content). This new structural mutation would be able to reduce the variation in oleic acid percentage to changes in the minimum night temperature (MNT). The aim of this work was to assess the response of oil fatty acid composition of the new high oleic mutation to MNT compared to traditional and Pervenets genotypes. Field experiments in different sowing dates and locations and one growth chambers experiment were performed to explore a wide range of temperatures (11.8–23.2°C) during grain filling. The oleic acid percentage in traditional and high oleic Pervenets genotypes varied between 15.0–50.9% and 87.4–91.2%, respectively, while the new mutation genotype presented values of oleic acid between 91.3 and 92.5%. Moreover, the oleic acid percentage of traditional and Pervenets genotypes showed a linear and positive response to temperature (slopes 2.95 and 0.28%oleic acid °C−1, respectively). No response to temperature was detected in the new mutation genotype. The ultra-high oleic quality from the new high oleic sunflower mutant could be obtained in a wide range of environments as the fatty acid composition was not affected by temperature during grain filling, representing an advantage over the high oleic Pervenets and traditional genotypes.
Strong evidence demonstrated the negative effect of trans fatty acid (TFA) intake on cardiovascular diseases (CVD), diabetes, systemic inflammation, and hemostasis. As a consequence, different ...regulatory actions have been developed around the world, aiming to reduce human consumption of TFA. Replacement for TFA functionality requires incorporation of plastic and stable saturated fats; the present options are palm or fully hydrogenated oils. Palm oil has been described as responsible for negative biological effects on serum cholesterol levels and CVD risk. Different epidemiological and clinical studies recommend reduction of saturated fatty acid (SFA) intake, mainly myristic and palmitic acids. Experimental evidence strongly suggests that stearic acid is a wholesome substitute for TFAs and other SFAs in food manufacturing. In this article, biological effects of stearic acid on human health are reviewed in comparison to TFAs, SFAs, and unsaturated fatty acids. Current revised understanding on dietary intake, digestion, and absorption is also covered.
Nucleotide binding site-leucine rich repeat (NBS-LRR) proteins are encoded by a ubiquitous gene family in sunflower and frequently harbor disease resistance genes. We investigated NBS-LRR-encoding ...resistance gene candidates (RGCs) flanking the downy mildew resistance genes Pl ₈ and Pl ₁₄ and the rust resistance gene R Adv , which map on the NBS-LRR clusters of linkage groups 1 and 13 in sunflower genome. We shotgun sequenced bacterial artificial chromosome (BAC) clones proximal to Pl ₈ , Pl ₁₄ , and R Adv and identified seven novel non-Toll/interleukin-1 receptor (TIR)-like NBS-LRR RGCs, which clustered with previously identified RGCs of linkage group 13 but were phylogenetically distant from the TIR- and non-TIR-NBS-LRR-encoding superfamilies of sunflower. Six of the seven predicted RGCs have intact open reading frames and reside in genomic segments with abundant transposable elements. The genomic localization and sequence similarity of the novel non-TIR-like predicted RGCs suggests that they originated from tandem duplications. RGCs in the proximity of Pl ₈ and R Adv were likely introgressed from silverleaf sunflower genome, where the RGC cluster of linkage group 13 is duplicated in two independent chromosomes that have different architecture and level of recombination from the respective common sunflower chromosomes.
Wild biotypes of cultivated sunflower (Helianthus annuus L.) are weeds in corn (Zea mays L.), soybean (Glycine max L.), and other crops in North America, and are commonly controlled by applying ...acetohydroxyacid synthase (AHAS)-inhibiting herbicides. Biotypes resistant to two classes of AHAS-inhibiting herbicides-imidazolinones (IMIs) or sulfonylureas (SUs)-have been discovered in wild sunflower populations (ANN-PUR and ANN-KAN) treated with imazethapyr or chlorsulfuron, respectively. The goals of the present study were to isolate AHAS genes from sunflower, identify mutations in AHAS genes conferring herbicide resistance in ANN-PUR and ANN-KAN, and develop tools for marker-assisted selection (MAS) of herbicide resistance genes in sunflower. Three AHAS genes (AHAS1, AHAS2, and AHAS3) were identified, cloned, and sequenced from herbicide-resistant (mutant) and -susceptible (wild type) genotypes. We identified 48 single-nucleotide polymorphisms (SNPs) in AHAS1, a single six-base pair insertion-deletion in AHAS2, and a single SNP in AHAS3. No DNA polymorphisms were found in AHAS2 among elite inbred lines. AHAS1 from imazethapyr-resistant inbreds harbored a C-to-T mutation in codon 205 (Arabidopsis thaliana codon nomenclature), conferring resistance to IMI herbicides, whereas AHAS1 from chlorsulfuron-resistant inbreds harbored a C-to-T mutation in codon 197, conferring resistance to SU herbicides. SNP and single-strand conformational polymorphism markers for AHAS1, AHAS2, and AHAS3 were developed and genetically mapped. AHAS1, AHAS2, and AHAS3 mapped to linkage groups 2 (AHAS3), 6 (AHAS2), and 9 (AHAS1). The C/T SNP in codon 205 of AHAS1 cosegregated with a partially dominant gene for resistance to IMI herbicides in two mutant x wild-type populations. The molecular breeding tools described herein create the basis for rapidly identifying new mutations in AHAS and performing MAS for herbicide resistance genes in sunflower.
Within cetartiodactyl species, both New and Old World camelids are uniquely adapted to the extremely hot and dry climates of African-Asian territories and to the high altitude cold and hypoxic ...environment of the whole Andean area. In order to investigate the potential association between these particular adaptations and mitochondrial aerobic energy production, we examined the camelid genes of cytochrome c oxidase subunits I, II, and III and the replacement of amino acids inferred. We found that all subunits had undergone a number of replacements in sites otherwise conserved in other cetartiodactyls. Changes of COXI and COXIII were mainly located in the transmembrane helices of proteins. For COXII, although most of the changes did not occur in sites directly involved in electron transfer, a shift of D by T at 115 position of Old World camelid might modify electrostatic interactions with cytochrome c. COXII also showed an increased relative evolutionary rate respect to other cetartiodactyls compared.
Sunflower (Helianthus annuus L.) is an important oilseed crop grown widely in various areas of the world. Classical genetic studies have been extensively undertaken for the improvement of this ...particular oilseed crop. Pertaining to this endeavor, we developed a "chemically induced mutated genetic resource for detecting SNP by TILLING" in sunflower to create new traits.
To optimize the EMS mutagenesis, we first conducted a "kill curve" analysis with a range of EMS dose from 0.5% to 3%. Based on the observed germination rate, a 50% survival rate i.e. LD50, treatment with 0.6% EMS for 8 hours was chosen to generate 5,000 M2 populations, out of which, 4,763 M3 plants with fertile seed set. Phenotypic characterization of the 5,000 M2 mutagenised lines were undertaken to assess the mutagenesis quality and to identify traits of interest. In the M2 population, about 1.1% of the plants showed phenotypic variations. The sunflower TILLING platform was setup using Endo-1-nuclease as mismatch detection system coupled with an eight fold DNA pooling strategy. As proof-of-concept, we screened the M2 population for induced mutations in two genes related to fatty acid biosynthesis, FatA an acyl-ACP thioesterase and SAD the stearoyl-ACP desaturase and identified a total of 26 mutations.
Based on the TILLING of FatA and SAD genes, we calculated the overall mutation rate to one mutation every 480 kb, similar to other report for this crop so far. As sunflower is a plant model for seed oil biosynthesis, we anticipate that the developed genetic resource will be a useful tool to identify novel traits for sunflower crop improvement.
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