Coral reefs are one of the most spectrally diverse environments, both in terms of habitat and animal color. Species identity, sex, and camouflage are drivers of the phenotypic diversity seen in coral ...reef fishes, but how the phenotypic diversity is reflected in the genotype remains to be answered. The labrids are a large, polyphyletic family of coral reef fishes that display a diverse range of colors, including developmental color morphs and extensive behavioral ecologies. Here, we assess the opsin sequence and expression diversity among labrids from the Great Barrier Reef, Australia. We found that labrids express a diverse palette of visual opsins, with gene duplications in both RH2 and LWS genes. The majority of opsins expressed were within the mid-to-long wavelength sensitive classes (RH2 and LWS). Three of the labrid species expressed SWS1 (ultra-violet sensitive) opsins with the majority expressing the violet-sensitive SWS2B gene and none expressing SWS2A. We used knowledge about spectral tuning sites to calculate approximate spectral sensitivities (λmax) for individual species' visual pigments, which corresponded well with previously published λmax values for closely related species (SWS1: 356-370 nm; SWS2B: 421-451 nm; RH2B: 452-492 nm; RH2A: 516-528 nm; LWS1: 554-555 nm; LWS2: 561-562 nm). In contrast to the phenotypic diversity displayed via color patterns and feeding ecology, there was little amino acid diversity within the known opsin sequence tuning sites. However, gene duplications and differential expression provide alternative mechanisms for tuning visual pigments, resulting in variable visual sensitivities among labrid species.
In this study, we conducted a unique survey of marine ornamental fishes appearing in UK retail stores, as well as a review of government trade statistics, with the aim to significantly strengthen the ...evidence‐base in support of future management initiatives. Fifty marine aquarium retailers were visited. A total of 380 marine aquarium fish species (4926 individuals), from 48 families were recorded with the largest proportion of individuals belonging to the families Pomacentridae, Acanthuridae, Apogonidae, Labridae, Pomacanthidae, Gobiidae and Labridae. The majority of fishes for sale (91% of species) originated from the Indo‐Pacific Ocean, with only a small number (9% of species) derived from the Atlantic Ocean. However, exact sources of individual species were unclear and poorly documented. Government trade statistics revealed that the ornamental reef‐fish trade in the UK grew markedly between 1996 and 2008 with a rapid acceleration in 2003–2004. However, imports have declined since 2008 and amounted to less than 305,000 kg in 2017 with an economic value of UK £3 million (c. US $3.8). Recent trade data (2017) identify Indonesia, USA, Philippines and the Maldives as the most important countries in terms of imports to the UK. The UK is an important exporter of wild‐caught fishes via trans‐shipment, but also production of tank‐reared animals. Several species observed for sale in the UK have been designated by the IUCN and CITES as being of conservation concern, although all these animals are thought to have been captive‐reared.
Crustaceans are one of the most influential groups in aquatic trophic networks by providing a major connection between primary production and higher consumers. Although coral reefs support a high ...diversity and abundance of crustaceans and crustacean predators, their trophic interrelationships remain unclear. Using predator gut content analyses, we investigated trophic relationships between Crustacea and adult fishes of the family Labridae, which are one of the most abundant and diverse families of marine crustacean predators. Crustaceans were present within the guts of 93 % of the 30 wrasse genera investigated. We found a distinct division between micro- and macro-crustacean predators: wrasses <80 mm standard length (SL) were predominantly micro-crustacean feeders, while wrasses >90 mm SL displayed a predominantly macro-Crustacea diet. Notably, micro-crustacean predators tended to specialise on certain crustacean taxa, whereas macro-crustacean predators consumed mostly brachyurans. Our findings highlight complex patterns of feeding diversity within crustacean predators that prompt a more nuanced approach to defining the role of crustacean-feeding fishes in coral reef trophodynamics.
The wrasses (Labridae) are one of the most successful and species-rich families of the Perciformes order of teleost fish. Its members display great morphological diversity, and occupy distinct ...trophic levels in coastal waters and coral reefs. The cleaning behaviour displayed by some wrasses, such as corkwing wrasse (Symphodus melops), is of particular interest for the salmon aquaculture industry to combat and control sea lice infestation as an alternative to chemicals and pharmaceuticals. There are still few genome assemblies available within this fish family for comparative and functional studies, despite the rapid increase in genome resources generated during the past years. Here, we present a highly continuous genome assembly of the corkwing wrasse using PacBio SMRT sequencing (x28.8) followed by error correction with paired-end Illumina data (x132.9). The present genome assembly consists of 5040 contigs (N50 = 461,652 bp) and a total size of 614 Mbp, of which 8.5% of the genome sequence encode known repeated elements. The genome assembly covers 94.21% of highly conserved genes across ray-finned fish species. We find evidence for increased copy numbers specific for corkwing wrasse possibly highlighting diversification and adaptive processes in gene families including N-linked glycosylation (ST8SIA6) and stress response kinases (HIPK1). By comparative analyses, we discover that de novo repeats, often not properly investigated during genome annotation, encode hundreds of immune-related genes. This new genomic resource, together with the ballan wrasse (Labrus bergylta), will allow for in-depth comparative genomics as well as population genetic analyses for the understudied wrasses.
•Sequencing and assembly of the corkwing wrasse genome.•Possible adaptations related to stress response and glycosylation.•Comparative analysis of gene copy numbers in wrasses.•De novo repeats, often discarded, encode hundreds of immune-related genes in wrasses.
Ectotherms display substantial demographic variation across latitudinal gradients of temperature. Higher temperatures are often associated with smaller size, rapid initial growth rates, and early ...maturation, generally described as the Temperature-Size Rule (TSR). The longevity of most ectotherms also declines at warmer, lower latitudes. However, these patterns may be modified by increases in food resources that can flow on to continuous growth and large adult size. The present study estimates age-based demographic parameters of large-bodied tropical wrasses (
Hemigymnus melapterus
,
H. fasciatus
,
Cheilinus fasciatus
, and
Oxycheilinus digramma
) collected from Philippine fish markets (9–11°N) and sampled from Palm (18.53–18.70°S) and Whitsunday (20.05–20.21°S) reefs on the Great Barrier Reef, Australia (GBR). Differences in longevity, initial growth rates, and the age at sexual maturation at a biogeographic scale, between the Philippines and GBR, conformed to predictions of the TSR. However, Philippine specimens exhibited greater relative body condition and sustained periods of growth beyond sexual maturity resulting in larger adult size than GBR samples. Size-structure data from Philippine marine reserves and fished sites indicated that these differences were not confounded by fishery-dependent sampling. Moreover, latitudinal length–weight relationships could not be explained by lower densities of the focal wrasses in the Philippines or by relative gonad size. Less pronounced patterns of demographic variation that differed across species were evident at a regional scale, among Palm and Whitsunday reefs. Patterns of demographic variation between the Philippines and GBR strongly suggest that differences in food resource levels will be important in explaining the observed geographic variation.
Early burst patterns of diversification have become closely linked with concepts of adaptive radiation, reflecting interest in the role of ecological opportunity in modulating diversification. But, ...this model has not been widely explored on coral reefs, where biodiversity is exceptional, but many lineages have high dispersal capabilities and a pan-tropical distribution. We analyze adaptive radiation in labrid fishes, arguably the most ecologically dominant and diverse radiation of fishes on coral reefs. We test for timedependent speciation, trophic diversification, and origination of 15 functional innovations, and early bursts in a series of functional morphological traits associated with feeding and locomotion. We find no evidence of time-dependent or early burst evolution. Instead, the pace of speciation, ecological diversification, and trait evolution has been relatively constant. The origination of functional innovations has slowed over time, although few arose early. The labrid radiation seems to have occurred in response to extensive and still increasing ecological opportunity, but within a rich community of antagonists that may have prevented abrupt diversification. Labrid diversification is closely tied to a series of substantial functional innovations that individually broadened ecological diversity, ultimately allowing them to invade virtually every trophic niche held by fishes on coral reefs.
A scarcity of life-history data currently exists for many exploited coral reef fishes, hindering our ability to interpret fishery dynamics and develop sound conservation policies. In particular, ...parrotfishes (Family Labridae) represent a ubiquitous and ecologically important group that is increasingly prevalent in commercial and artisanal fisheries worldwide. We used both fishery-dependent and fishery-independent data to examine the effect of life histories on vulnerability to overexploitation in parrotfishes. Vulnerability for each species was derived from independent measures associated with both temporal (20-year catch records) and spatial datasets. Most life-history traits examined were significant predictors of vulnerability across species, but their relative utility differed considerably. Length-based traits (e.g., lengths at maturity and sex change, maximum length) were generally superior to age-based traits (e.g., life span), but one age-based trait, age at female maturation, was the best predictor. The results suggest that easily derived metrics such as maximum length can be effective measures of sensitivity to exploitation when applied to phylogenetically related multispecies assemblages, but more holistic and comprehensive age-based demographic data should be sought, especially in data-deficient and heavily impacted regions. Given the increasing prevalence of parrotfishes in the global coral reef harvest, species-specific responses demonstrate the capacity for heavy fishing pressure to alter parrotfish assemblages considerably.
The feeding apparatus directly influences a species’trophic ecology. In fishes, our understanding of feeding modes is largely derived from studies of rigid structures (i.e. bones, teeth, gill ...rakers). A recently described lip innovation, however, highlighted the role of soft anatomy in enabling specialized feeding modes. In this study, we explore whether similar diversification may also occur in the soft anatomy of the buccal cavity. Using four key anatomical traits to classify 19 species (14 genera) of wrasses, we evaluated the relationship between anatomical specialization of the buccal cavity and diet. Our data revealed a previously undocumented anatomical adaptation in the mouths of fairy wrasses (Cirrhilabrus): the mucosa throughout the buccal cavity (i.e. anterior to the pharynx) is packed with goblet cells, enabling it to secrete large quantities of mucus in this region; a new trait that, until now, had not been documented in wrasses. This disparity reflects diet differences, with mucus secretion found only in planktivorous Cirrhilabrus that feed predominantly on amorphous organic material (potentially gelatinous organisms). This suggests a cryptic mucus-based resource partitioning in planktivorous wrasses.
Biodiversity loss and fishing-induced changes in the size distributions of fishes can impact ecosystem function on coral reefs. These changes have led to an urgent need for studies on the particular ...roles of species to underpin effective coral reef management. The present study focuses on the feeding ecology of 6 size classes (from 2.5 to 30 cm total length) of Scarus rivulatus (family Labridae), one of the most abundant parrotfishes on the Great Barrier Reef, Australia. Individuals in all 6 size classes strongly selected the epilithic algal matrix for foraging and rejected other substratum types, including coral, macroalgae and sand. The 6 size classes also had similar feeding rates (bites min super(-1)) and diel feeding patterns, with higher feeding activity during the afternoon. However, the size of grazing scars by S. rivualtus differed significantly among the 6 size classes, with small individuals scraping a greater substratum area per unit biomass and larger individuals taking a greater volume of material per unit biomass. Thus, biomass cannot be not be viewed as a proxy for ecosystem impact; different sized individuals of S. rivulatus, and probably other parrotfish species, have a markedly different impact on the reef substratum. Selective harvesting of large individuals will therefore change the functional role of this species. These results emphasize the importance of considering the size of individuals when evaluating the role of reef species in ecosystem process. These intraspecific functional differences will be critical when formulating reef management strategies and evaluating the impact of fishing activity on reef ecosystems.
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