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  • Abundance-occupancy distributions to prioritize plant core microbiome membership
    Shade, Ashley ; Stopnišek, Nejc
    Core microbiome members are consistent features of a dataset that are hypothesized to reflect underlying functional relationships with the host. A review of the recent plant- microbiome literature ... reveals a variety of study-specific approaches used to define the core, which presents a challenge to building a general plant-microbiome framework. Abundance-occupancy distributions, used in macroecology to describe changes in community diversity over space, offer an ecological approach for prioritizing core membership for both spatial and temporal studies. Additionally, neutral models fit to the abundance-occupancy distributions can provide insights into deterministically selected core members. We provide examples and code to systematically explore a core plant microbiome from abundance-occupancy distributions. Though we focus on examples from and discussions relevant to the plant microbiome, the abundance-occupancy method can be widely and generally applied to prioritize core membership for any microbiome.
    Vir: Current opinion in microbiology. - ISSN 1369-5274 (Vol. 49, 2019, str. 50–58)
    Vrsta gradiva - članek, sestavni del
    Leto - 2019
    Jezik - angleški
    COBISS.SI-ID - 104051715

    Povezava(-e):

    https://www.sciencedirect.com/science/article/pii/S1369527419300426
    DOI

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