•Development Goal: Indonesia aims for net-zero emissions by 2060, driving nuclear microreactor development.•Design Focus: Incorporating thorium into the reactor design for improved efficiency and sustainability.•Analysis Scope: Neutronic analysis considers thorium-uranium utilization, emphasizing keff calculation.•Parameters Explored: Various thorium mass fractions (0 % to 90 %), core temperatures (900 K to 1200 K), and active core heights (125 cm to 197 cm).•Impact on Criticality: Thorium-uranium composition significantly influences reactor criticality. Indonesia has committed to reducing greenhouse gas emissions in the framework of net zero emissions, and nuclear energy will be a part of the energy mix. Indonesia has been developing a 10 MWt micro reactor of high temperature gas-cooled reactor (HTGR) with pebble fuel containing 17 % enriched UO2 kernel with OTTO cycle scheme. For the government’s interest to use thorium, this paper assesses the possibility of replacing uranium with thorium. The assessment is performed by calculating the effective neutron multiplication factor (keff). Neutrons captured by 232Th lead to the formation of two intermediate isotopes, namely 233Th and 233Pa, the latter being a significant neutron absorption cross-section. Neutronics analysis is performed using parameters of thorium mass fraction, core temperature, and active core height. The thorium mass fractions varies from 0 % to 90 % Th. The core temperatures are in the range of the normal operating temperature at 900 K, assumed superheat temperature at 1200 K, and shutdown temperature at 300 K. The active core height varies at 197, 180, 150, 130, and 125 cm. This paper aims to determine the keff of the IMR at maximum thorium/uranium mass fraction composition, maximum active core height, core temperature, and fuel burn-up. The MCNP code is used for analysis. The results show that keff decreases with increasing thorium mass fraction and core temperature, and decreasing active core height. Calculations with thorium mass fraction of 15 %, core active height of 197 cm in 20 steps show that the reactor may be continuously operated for more than 920 days without refueling. The analysis results show that IMR design has negative temperature reactivity, inherent safety characteristics, and the ability to use thorium-based fuels.