An increasing number of terrestrial‐ and space‐based radio‐communication systems are influenced by the ionospheric space weather, making the ionospheric state increasingly important to forecast. In this study, a novel extended encoder‐decoder long short‐term memory extended (ED‐LSTME) neural network, which can predict ionospheric total electron content (TEC) is proposed. Useful inherent features were automatically extracted from the historical TEC by LSTM layers, and the performance of the proposed model was enhanced by considering solar flux and geomagnetic activity data. The proposed ED‐LSTME model was validated using 15‐min TEC values from GPS measurements over one solar cycle (from January 2006 to July 2018) collected at 15 GPS stations in China. Different assessment experiments were conducted in different geographical locations and seasons as well as under varying geomagnetic activities, to comprehensively evaluate the model's performance. These comparative experiments were conducted using an ED‐LSTM, a traditional LSTM, a deep neural network, autoregressive integrated moving average, and the 2016 International Reference Ionosphere models. The results indicated that the ED‐LSTME model is superior to the other statistical models, with R2 and root mean square error values of 0.89 and 12.09 TECU, respectively. In addition, TEC was adequately predicted under different ionospheric conditions, and satisfactory results were obtained even under geomagnetically disturbed conditions. These results suggest that the prediction performance could be significantly improved by utilizing auxiliary data. These observations confirm that the proposed model outperforms several state‐of‐the‐art models in making predictions at different times and under diverse conditions. Key Points A novel extended encoder‐decoder long short‐term memory neural network (ED‐LSTME) for ionospheric total electron content (TEC) forecasting over China is developed ED‐LSTME shows a strong capability in improving TEC forecasting at different geographical locations, seasons, and geomagnetic conditions ED‐LSTME is robust and outperforms all the six selected baselines when comparing with the models in terms of their performance