We are developing detector arrays using microwave kinetic inductance detectors (MKIDs) for astronomical observations in the 100-GHz band and a readout system for MKID arrays with frequency sweeping scheme. Probe tones in this scheme are generated and acquired by a frequency sweep probe (FSP) which is a digital fast Fourier transform spectrometer (FFTS), while the probe tones are converted and modulated by an intermediate frequency (IF) section. Since the values of the resonance frequencies change under different photon backgrounds, an appropriate method to configure the probe tones is essential to preserve the dynamic of the detected signals. We considered a general IF section which is a cascade of up/down converter pairs and found that its characteristics can be described with the base band, the target band, the sign of probe tone order, and the sign of frequency sweep direction. We implemented an algorithm to make a list of tone frequencies from a list of resonance frequencies given. Using this configuring method, we assembled IF sections for an antenna-coupled MKID array and for a LEKID array and set up a prototype FSP. The resonance frequencies of the antenna-coupled MKIDs and the LEKIDs are at 4.6–5.1 GHz and 0.6–1.0 GHz, respectively, and their spectra were obtained successfully. The method enables us to configure the readout system for both types of arrays.