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Armougom, Fabrice; Poirot, Olivier; Moretti, Sébastien; Higgins, Desmond G.; Bucher, Phillip; Keduas, Vladimir; Notredame, Cedric
Bioinformatics, 10/2006, Letnik: 22, Številka: 19Journal Article
The APDB webserver uses structural information to evaluate the alignment of sequences with known structures. It returns a score correlated to the overall alignment accuracy as well as a local evaluation. Any sequence alignment can be analyzed with APDB provided it includes at least two proteins with known structures. Sequences without a known structure are simply ignored and do not contribute to the scoring procedure. Availability: APDB is part of the T-Coffee suite of tools for alignment analysis, it is available on . A standalone version of the package is also available as a freeware open source from the same address. Contact:cedric.notredame@europe.com
