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Yau, Christopher
Bioinformatics, 10/2013, Letnik: 29, Številka: 19Journal Article
Recent major cancer genome sequencing studies have used whole-genome sequencing to detect various types of genomic variation. However, a number of these studies have continued to rely on SNP array information to provide additional results for copy number and loss-of-heterozygosity estimation and assessing tumour purity. OncoSNP-SEQ is a statistical model-based approach for inferring copy number profiles directly from high-coverage whole genome sequencing data that is able to account for unknown tumour purity and ploidy. MATLAB code is available at the following URL: https://sites.google.com/site/oncosnpseq/.
