Kje so emonski otroci? Županek, Bernarda; Leskovar, Tamara
Keria: Studia Latina et Graeca,
12/2023, Volume:
25, Issue:
1
Journal Article
Peer reviewed
Open access
V prispevku raziskujeva vprašanja, povezana z zdravstvenim stanjem in smrtnostjo otrok v Emoni. V ospredje postavljava diskrepanco med ocenjeno visoko smrtnostjo otrok v rimskem času in relativno ...nizkim odstotkom doslej odkritih otroških grobov v Emoni. Rezultati analiz kremiranih ostankov iz nekaterih zgodnjerimskih emonskih grobov kažejo, da je bila v posamezen grob včasih pokopana več kot ena oseba, pogosto skupaj odrasli in otrok. V prispevku se sprašujeva, ali so to doslej neodkriti pokopi emonskih otrok, in iščeva tudi druge možne razlage. Poleg tega podajava nekaj informacij o zdravstvenem stanju emonskih otrok na osnovi doslej pregledanega gradiva.
Shape, size, composition, and function of the bones in the human body vary on the macro, micro and nanoscale. This can influence changes caused by taphonomy and post-mortem preservation, including ...DNA. Highly mineralised compact bone is less susceptible to taphonomic factors than porous trabecular bone. Some studies imply that DNA can be better preserved in trabecular bone, due to remnants of the soft tissue or bacteria better digesting organic matter while not digesting DNA. The aim of this study was to understand the differences between compact (diaphyses) and trabecular (epiphyses) bone on a molecular level and thus the reasons for the better preservation of the DNA in the trabecular bone. The powder obtained from epiphyses and diaphyses of metacarpals and metatarsals was analysed using ATR-FTIR spectroscopy and compared. Samples with poorest DNA preservation originated from diaphyses, predominantly of metatarsals. They were characterised by higher concentrations of phosphates and crystallinity, while lower collagen quality in comparison to samples with the best DNA preservation. Epiphyses presented higher concentrations of better-preserved collagen while diaphyses had higher concentrations of carbonates and phosphates and higher crystallinity. Due to better-preserved collagen in the epiphyses, the soft tissue remnants hypothesis seems more likely than the bacteria hypothesis.
When subadult skeletons need to be identified, biological sex diagnosis is one of the first steps in the identification process. Sex assessment of subadults using morphological features is ...unreliable, and molecular genetic methods were applied in this study. Eighty-three ancient skeletons were used as models for poorly preserved DNA. Three sex-informative markers on the Y and X chromosome were used for sex identification: a qPCR test using the PowerQuant Y target included in PowerQuant System (Promega), the amelogenin test included in ESI 17 Fast STR kit (Promega), and a Y-STR amplification test using the PowerPlex Y-23 kit (Promega). Sex was successfully determined in all but five skeletons. Successful PowerQuant Y-target, Y-amelogenin, and Y-chromosomal STR amplifications proved the presence of male DNA in 35 skeletons, and in 43 subadults female sex was established. No match was found between the genetic profiles of subadult skeletons, and the elimination database and negative control samples produced no profiles, indicating no contamination issue. Our study shows that genetic sex identification is a very successful approach for biological sexing of subadult skeletons whose sex cannot be assessed by anthropological methods. The results of this study are applicable for badly preserved subadult skeletons from routine forensic casework.
Freezing bone samples to preserve their biomolecular properties for various analyses at a later time is a common practice. Storage temperature and freeze–thaw cycles are well-known factors affecting ...degradation of molecules in the bone, whereas less is known about the form in which the tissue is most stable. In general, as little intervention as possible is advised before storage. In the case of DNA analyses, homogenization of the bone shortly before DNA extraction is recommended. Because recent research on the DNA yield from frozen bone fragments and frozen bone powder indicates better DNA preservation in the latter, the aim of the study presented here was to investigate and compare the chemical composition of both types of samples (fragments versus powder) using ATR-FTIR spectroscopy. Pairs of bone fragments and bone powder originating from the same femur of 57 individuals from a Second World War mass grave, stored in a freezer at − 20 °C for 10 years, were analyzed. Prior to analysis, the stored fragments were ground into powder, whereas the stored powder was analyzed without any further preparation. Spectroscopic analysis was performed using ATR-FTIR spectroscopy. The spectra obtained were processed and analyzed to determine and compare the chemical composition of both types of samples. The results show that frozen powdered samples have significantly better-preserved organic matter and lower concentrations of B-type carbonates, but higher concentrations of A-type carbonates and stoichiometric apatite. In addition, there are more differences in the samples with a low DNA degradation index and less in the samples with a high DNA degradation index. Because the results are inconsistent with the current understanding of bone preservation, additional research into optimal preparation and long-term storage of bone samples is necessary.
ATR-FTIR spectroscopy is a fast and accessible, minimally or non-destructive technique which provides information on physiochemical characteristics of analyzed materials. In forensic and ...archaeological sciences, it is commonly used for answering numerous questions, including the archaeological or forensic context of the human skeletal remains. In this research, the accuracy of ATR-FTIR-obtained spectra for separation between forensic, WWII, and archaeological human skeletal remains was investigated. Building from the previously proposed methodological procedures, various ratio-based and whole spectra separation procedures were applied, carefully analyzed, and evaluated. Results showed that employing whole spectral domains works best for the separation of archaeological, WWII, and forensic samples, even with samples of highly variable origin. Principal component analysis (PCA) further highlighted the necessity of acknowledging all the major components in the remains: amides, phosphates, and carbonates for the separation. Most influential proved to be amide I, namely its secondary structure, which presented well-preserved and organized collagen structure in forensic and WWII samples, while highly degraded in archaeological samples. Using the whole spectral domain for separation between samples from different contexts proved to be fast and simple, with no manipulation beyond baseline correction and normalization of spectra necessary. However, a dataset with samples of known origin is required for the learning model and predictions. A less accurate alternative is separation based on combining ratios of peaks correlating to organics and minerals in the bone, which eliminated overlapping and managed to classify the majority of the samples correctly as archaeological, WWII, or forensic.
Attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy is a relatively fast and inexpensive but reliable method that can be used as a rough screening tool for DNA ...preservation. Although it is an excellent analytical tool, it only provides relative information on the chemical structure of heterogeneous materials such as bone and its usefulness and accuracy for predicting the preservation of DNA in samples originating from different body regions of minimally altered remains was never tested before. 144 bone samples were collected from different body regions of three individuals discovered in a Second World War mass grave. DNA was extracted and quantified, followed by STR typing. Samples were analysed with ATR-FTIR spectroscopy. Comparing the preservation state of DNA and chemometric indices, the usefulness of the method was tested. Correlations between the DNA preservation and chemometric indices were highly variable, especially when considering different body regions. Best DNA preservation was correlated with a balanced ratio between carbonates and phosphates, and with high collagen quality and quantity. It seems that, when dealing with relatively young and well-preserved remains, more attention should be paid to collagen quality. In addition, the results indicate that DNA quality and DNA quantity correlate differently with chemometric indices.
The first step in the analysis of human skeletal remains is the establishment of the biological profile of an individual. This includes sex assessment, which depends highly on the age of the ...individual and on the completeness and preservation state of the remains. Macroscopic methods only provide the assessment of sex, while for sex determination, molecular methods need to be included. However, poor preservation of the remains can make molecular methods impossible and only assessment can be performed. Presented research compares DNA-determined and morphologically assessed sex of adult and non-adult individuals buried in a modern-age cemetery (17th to late 19th century) in Ljubljana, Slovenia. The aim of the study was to assess the accuracy of commonly used macroscopic methods for sex assessment on a Slovenian post-medieval population. Results demonstrate that for adults, macroscopic methods employed are highly reliable and pelvic morphology, even the sciatic notch alone, is more reliable than skull. In non-adults, macroscopic methods are not as reliable as in adults, which agrees with previous research. This study shows how morphological and molecular methods can go hand in hand when building a biological profile of an individual. On their own, each methodology presented some individuals with undetermined sex, while together, sex of all the individuals was provided. Results confirm suitability of sex assessment based on skull and especially pelvic morphology in Slovenian post-medieval adults, while in the non-adult population molecular methods are advised.
ATR-FTIR spectroscopy provides detailed information about the physiochemical properties of the analysed material. It is used in archaeology and forensics for various purposes, including ...characterization of the preservation state of skeletal remains. Building on the previous research, we used an ATR-FTIR spectrometer to analyse samples from the remains at various PMIs (21st century AD - 16th century BC), deposition and storage conditions, and different skeletal elements. We used the spectra to assess the state of preservation of the remains and to test how informative the spectra are for estimating the PMI taking into account the skeletal element and the environmental conditions. The study of the spectra provided information on taphonomically induced physiochemical changes in the organic and inorganic components of the remains, which are related not only to the PMI but also to the conditions under which the remains were discovered or stored and, to a lesser extent, to the skeletal element. A clear separation between 21st and 20th century versus archaeological (≥18th century) samples was possible even in the case of significant taphonomically caused changes. In the older samples some overlaps remained because environmental factors overpowered time, nevertheless 80% of samples were placed in the correct century.
Analize človeških tkiv iz arheoloških kontekstov pomembno pripomorejo k razumevanju posameznikov in družb v preteklosti. Na primeru četvernega groba 336–339 s poznoantičnega grobišča Bled – ...Pristava predstavljamo potek in rezultate celostne interdisciplinarne raziskave, ki združuje nekaj pri raziskovanju skeletnih tkiv najpogosteje izvedenih analiz, rezultate teh pa povezujemo v širši arheološki in zgodovinski kontekst. Na podlagi zbranih podatkov je mogoče sklepati, da so bili štirje pokojniki, oče s hčerama in sinom, v skupni grob položeni sočasno in premišljeno, morda zaradi posebnih okoliščin ob smrti. Grobni pridatki postavijo kontekst v sredino 6. st., radiokarbonsko datiranje pa v čas 5. in prve polovice 6. st. Analize stabilnih izotopov kažejo nihanja v prehrani skozi različna življenjska obdobja, povezana s spremembo prehrane in fiziološkim stresom. Rezultati interdisciplinarne študije, izvedene na posmrtnih ostankih štirih oseb, prikazujejo, kako se različne analize dopolnjujejo in/ali med seboj potrjujejo, kako velik je njihov domet pri razumevanju življenja in smrti obravnavanih oseb ter kakšen je njihov potencial za razumevanje življenja celotnih skupnosti v določenih zgodovinskih obdobjih.
Background: Carbon (δ
13
C) and nitrogen (δ
15
N) isotope ratios of collagen from teeth and bone are used to study human nutrition and health. As bones are constantly remodelling throughout life, ...isotopic values of bone collagen represent an average of several years. In contrast, human teeth do not remodel and their primary dentine contains only the isotopic data from the time of formation. In contrast to all other bones, human auditory ossicles also appear not to remodel. As they develop in utero and finish formation in the first 2 years of life, their collagen should also represent isotopic values of these two relatively short periods.
Aim: By comparing δ
13
C and δ
15
N data from ossicles and incremental dentine, this study aims to investigate how two developmental periods of the ossicles, in utero and the first 2 years of life, reflect in collagen obtained from the ossicles.
Subject and methods: Ossicle and tooth samples of 12 individuals aged 0.5 ± 0.4 years to 13 ± 1 years from the nineteenth century St. Peter's burial ground in Blackburn were collected and processed to obtain bulk bone and incremental dentine collagen which was measured for δ
13
C and δ
15
N.
Results: Averaged δ
13
C and δ
15
N of ossicles are lower when compared to every age group except after 3 years of age. Average offset between ossicles and dentine of different groups ranges from 0.4-0.9‰ for δ
13
C and from 0.3-0.9‰ for δ
15
N, with highest counterbalance at birth and after the first 5 months after birth.
Conclusions: There appears to be a systematic offset between the dentine and ossicle data. It seems that the second phase of development does not influence the isotopic values of collagen significantly and the data we are obtaining from ossicles represents the in utero period.
PDF
