The productivity of durum wheat Triticum turgidum subsp. durum (Desf.) van Slageren is affected by drought and/or high temperatures, challenges to be amplified by climate change. Pre‐breeding using ...wild relatives can supply useful traits for durum wheat improvement to adapt to major abiotic and biotic stresses. Sixty‐seven lines issued from backcrosses of Cham5 and Haurani durum wheat varieties with accessions of Triticum aegilopoides (Link) Bal. ex Koern., T. dicoccoides Koern. ex Schweinf., T. urartu Thumanian ex Gandilyan, and Aegilops speltoides Tausch were evaluated for drought and heat tolerance. The trials were conducted during two seasons (2016−2017 and 2017–2018) at Tessaout, Morocco, under full irrigation (optimal conditions) and rainfed conditions (drought stressed) and at Wed Medani, Sudan, under full irrigation combined with heat stress. The recurrent parents, along with eight best cultivars and elite breeding lines, were used as checks. Drought reduced the grain yield by 62%. Grain yield and drought tolerance index were used to identify lines to be used by breeding programs to enhance drought and heat tolerance. The derivatives lines 142014 (Cham5*3/T. aegilopoides), 142074 (Cham5*3/T. dicoccoides), and 142015 along with the checks Icarachaz and Gidara 2 ranked among the best under heat stress. Under drought stress, the lines 141972 (Haurani*2/T. urartu) and 141973 (Cham5*2/T. dicoccoides) yielded 196 and 142% of their recurrent parents’ yield, respectively. High variation was found for agronomic and phenology traits, with heading time explaining 16% of grain yield under drought, while thousand kernel weight accounted for 18% of the yield under heat. We conclude that gene introgression from wild relatives pays off and can increase wheat resilience to cope with climate change effects.
Abstract
Barley production worldwide is limited by several abiotic and biotic stresses and breeding of highly productive and adapted varieties is key to overcome these challenges. Leaf scald, caused ...by
Rhynchosporium commune
is a major disease of barley that requires the identification of novel sources of resistance. In this study two subsets of genebank accessions were used: one extracted from the Reference set developed within the Generation Challenge Program (GCP) with 191 accessions, and the other with 101 accessions selected using the filtering approach of the Focused Identification of Germplasm Strategy (FIGS). These subsets were evaluated for resistance to scald at the seedling stage under controlled conditions using two Moroccan isolates, and at the adult plant stage in Ethiopia and Morocco. The results showed that both GCP and FIGS subsets were able to identify sources of resistance to leaf scald at both plant growth stages. In addition, the test of independence and goodness of fit showed that FIGS filtering approach was able to capture higher percentages of resistant accessions compared to GCP subset at the seedling stage against two Moroccan scald isolates, and at the adult plant stage against four field populations of Morocco and Ethiopia, with the exception of Holetta nursery 2017. Furthermore, four machine learning models were tuned on training sets to predict scald reactions on the test sets based on diverse metrics (accuracy, specificity, and Kappa). All models efficiently identified resistant accessions with specificities higher than 0.88 but showed different performances between isolates at the seedling and to field populations at the adult plant stage. The findings of our study will help in fine-tuning FIGS approach using machine learning for the selection of best-bet subsets for resistance to scald disease from the large number of genebank accessions.
Tetraclinis articulata
(Vahl) Masters (Cupressaceae) is a woody tree species indigenous to North Africa. It is also found occasionally in Malta and Spain showing significant adaptability to different ...bioclimatic conditions. Due to its economic and ecologic values, this tree is affected by human and environmental disturbance leading to habitat fragmentation and genetic diversity loss. In this study, we aimed to promote the conservation of
T. articulata
, by measuring the allelic richness of a representative sample of 129 germplasms. Results showed differences in allele distribution. Inter–simple sequence repeat (ISSR) markers and the advanced maximization strategy implemented in PowerCore software were deployed to establish the first core collection of
T. articulata
. A core collection containing 10.07% out of the 129
T. articulata
germplasms was established. The representativeness of the core collection was evaluated and validated by different methods. The genetic diversity parameters or molecular traits (the observed number of alleles (Na), the effective number of alleles (Ne), Shannon’s information index (
I
), and Nei’s expected heterozygosity (He) showed similarities between the core collection and the entire collection averaging at Na = 1.712, Ne = 1.398,
I
= 0.395, and He = 0.253 and Na = 1.970 Ne = 1.363,
I
= 0.382, and He = 0.238, respectively. The analysis of molecular variance indicates that most of the genetic variation in
Articulata
core collections resided within populations (96%), with lesser amounts among populations (4%). Two clusters were identified with STRUCTURE and validated with unweighted pair group method with arithmetic mean dendrogram. The identified collection will be useful for conservation and breeding programs.
Durum wheat is the 10th most important crop in the world, and its use traces back to the origin of agriculture. Unfortunately, in the last century only part of the genetic diversity available for ...this species has been captured in modern varieties through breeding. Here, the population structure and genetic diversity shared among elites and landraces collected from 32 countries was investigated. A total of 370 entries were genotyped with Axiom 35K array to identify 8,173 segregating single nucleotide polymorphisms (SNPs). Of these, 500 were selected as highly informative with a PIC value above 0.32 and used to test population structure via DAPC, STRUCTURE, and neighbor joining tree. A total of 10 sub-populations could be identified, six constituted by modern germplasm and four by landraces of different geographical origin. Interestingly, genomic comparison among groups indicated that Middle East and Ethiopia had the lowest level of allelic diversity, while breeding programs and landraces collected outside these regions were the richest in rare alleles. Further, phylogenetic analysis among landraces indicated that Ethiopia might represent a second center of origin of durum wheat, rather than a second domestication site as previously believed. Together, the analyses carried here provide a global picture of the available genetic diversity for this crop and shall guide its targeted use by breeders.
The current study aimed to analyze bacterial communities' diversity and abundance in three different deserted areas (Merzouga, Mhamid Elghizlane, and Erg lihoud) located in Moroccan Sahara, as well ...as to investigate osmotolerant microorganisms producing hydrolytic enzymes. The isolates were taxonomically affiliated using 16S rRNA gene sequencing. Four different hydrolase activities (amylase, lipase, cellulase, and protease) and osmotic stress tolerance were evaluated. The phylogenetic analysis of 364 screened isolates belonged to three phyla (Firmicutes 73%, Proteobacteria 26% and Actinobacteria 1%) and 18 different genera, from
. The results detected a high proportion of osmotolerant and enzymes producing bacteria, many isolates can tolerate up to 55 °C (40%, 28%, and 30% in Merzouga, Mhamid Elghizlane, and Erg lihoudi, respectively). Meanwhile, the salinity tolerance reached 12% in some isolates with different proportions in each site, 29% in Merzouga, 24% in Mhamid Elghizlane, and 9% in Erg lihoudi. Furthermore, the enzymatic tests showed the presence of an amylolytic, lipolytic, cellulolytic, proteolytic activities in 20%, 31%, 63% and 72% of total strains, respectively. As a result, the present study is thus a preliminary yet critical step towards identifying the best bacterial candidates for further biotechnological applications.
The argan tree,
(L.) Skeels, is a horticultural forestry species characterized by its endemicity and adaptation to arid and semi-arid zones in the southwest of Morocco. Despite its limited ...geographical distribution, argan tree presents large genetic diversity, suggesting that improvement of argan is possible. This species plays important ecological, and socioeconomic roles in the sustainable development of the country. The integration of arganiculture into Moroccan agricultural policy has been implemented through a sector strategy, which is fully aligned with the conservation and regeneration of argan forest.
is suitable for incorporation into different agroforestry productive systems under agro-fruit-forest model and its domestication will provide a powerful means of socio-economic and environmental management. Here, we provide an overview of the argan tree literature and highlight the specific aspects of argan stands, as agro-forest systems, with the aim of developing an adequate strategy of conservation and domestication of this species. We introduce promising programs and projects for argan plantations and arganiculture, which have been adopted to relieve anthropogenic pressure on the natural argan forest.
Ulvan, carrageenan, alginate and laminarin were tested in olive trees' twigs to elicit phenolic metabolism and control verticillium wilt of olive (VWO) caused by Verticillium dahliae. The elicitation ...effect was determined through phenylalanine ammonia-lyase activity, total polyphenol content and lignin content. VWO was assessed in twigs previously elicited (24 h) and maintained in a solution containing bio-elicitors (2 g/L) and conidial suspension (10
6
conidia/mL). Our results showed stimulation of the phenolic metabolism and the decline of wilt symptoms. Ulvan reduced significantly the area under the disease progress curve for severity to 39.9% and the final incidence to 28.9%. Ulvan and alginate produced significant inhibitory rates on mycelial growth of the fungus in vitro. Seaweed polysaccharides might help to overcome VWO by strengthening the host defense metabolism and restricting the pathogen's growth.
Nasopharyngeal carcinoma (NPC) is a severe malignant disease. Despite its low frequency, NPC is very common in North African population. Radiotherapy is the standard therapeutic treatment of NPC. ...However, radioresistance hampers the success of treatment. At the molecular scale, radioresistance is due to genetic variations involved in DNA repair pathways in NPC patients. Several studies reported that single nucleotide polymorphisms (SNPs) in excision repair cross complementing group 1 (ERCC1) could be associated with radioresistance. In this optic, the present study aimed to evaluate the association between DNA repair gene polymorphisms ERCC1 C8092A and ERCC1 C118T and radiotherapy response of patients with NPC.
A total of 95 patients with confirmed NPC were recruited at the Mohammed VI Center for Cancer Treatment, Casablanca - Morocco between 2016 and 2018. Two single nucleotide polymorphisms in ERCC1 gene were genotyped. Multiple analysis software was used to assess the correlation between these SNPs and radio-therapeutic response.
Sequencing of ERCC1 C8092A polymorphism revealed that CC and CA genotypes were found in 51.6% and 45.3% of cases, respectively, whereas the homozygote AA genotype was reported in only 3.1% of cases. For ERCC1 C118T polymorphism, the heterozygote CT genotype was identified in 49.5% of cases. Homozygotes genotypes CC and TT were detected in 17.9% and 32.6% respectively of NPC cases. Of note, no significant association was found between the ERCC1 C8092A polymorphism and response to radiation therapy (p=0.81). Similarly, there was no significant association between the response to radiotherapy and allelic distribution (p=0.56). Likewise, no correlation was observed neither with genotypes (p=0.07) nor with alleles (p=0.09) of ERCC1 C118T polymorphism and response to radiation therapy.
Our results clearly showed that ERCC1 C8092A and ERCC1 C118T polymorphisms were not associated with response to radiotherapy in Moroccan NPC patients. Large studies are warranted to confirm the role of these SNPs in therapeutic response of NPC patients.
•The aquaporin gene family plays a pivotal role in crop stress response.•This comprehensive review identifies over 5200 AQP isoforms.•Provides valuable insights into the diverse functions of ...aquaporins in plants, enriching our understanding of their roles.
To enhance crop survival and yield, a comprehensive understanding of abiotic stresses responses is crucial. The aquaporin AQP gene family, renowned for its pivotal role in various physiological processes and environmental adaptations, offers potential for enhancing crop resilience. This systematic review aims to provide thorough insights into genome-wide analyses of aquaporin genes across various plant species. With the advent of whole-genome sequencing, genome-wide analyses have become indispensable for identifying novel AQP genes in plants. While numerous studies have reported the functional and structural characterization of these genes using in silico approaches, our approach involved a meta-analysis of papers available in various electronic databases, following predefined inclusion and exclusion criteria, up to November 2022. Incorporating 82 studies, this systematic review, collectively identified over 5200 AQP isoforms. The PIPs (1803), TIPs (1538), and NIPs (1297) subfamilies notably exhibited the highest number of isoforms, while SIPs and XIPs had 435 and 201 isoforms, respectively. Overall, this review constitutes a significant contribution, providing a comprehensive analysis of genome-wide data on plant aquaporin genes. It contributes to the understanding of the diverse roles of aquaporins and their isoforms, elucidating their functions and regulations across different plant species under various stress conditions.
Barley is an important crop worldwide known for its adaptation to harsh environments and used in multiple forms as feed, food and beverages. Its productivity is affected by major abiotic and biotic ...stresses. Scald caused by hemibiotrophic fungus
is a major foliar disease in many parts of the world. Host plant resistance is targeted by breeders to efficiently control this disease. An association mapping panel of 316 spring barley genotypes (AM2017) was screened for seedling resistance in greenhouse against three
isolates and for adult plant resistance in three field locations in Morocco. The phenotyping results showed different numbers of entries with resistant and moderately resistant reactions at both seedling and adult plant stages. The reactions differed between the isolates with the highest percentage of resistant genotypes observed for isolate SC-S611 (49.4%) and highest percentage of susceptible genotypes (73.8%) for isolate SC-1122. At adult plant stage, the highest percentage of scald resistant genotypes (64.5%) was observed at Rommani site compared to 56% at Guich site and only 28.8% at Marchouch site. Seven genotypes were resistant at the seedling and adult plant stages. Genome wide association study (GWAS) revealed 102 MTA (15 QTL) at the seedling stage, and 25 MTA (12 QTL) associated with scald resistance at the adult plant stage. In addition, the sequences of 92 out of 102 at SRT, and 24 out of 25 significant SNP markers at APR were located in genomic regions enriched with functional proteins involved in diverse cellular processes including disease resistance. These markers span over all chromosomes with the majority of SNPs located on 3H and 7H. This study has verified 18 QTL reported in previous studies. In addition, it was successful in identifying new sources of resistance and novel genomic regions which could help in enhancing scald resistance in barley breeding programs.
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