The aoudad (Ammotragus lervia Pallas 1777) is an ungulate species, native to the mountain ranges of North Africa. In the second half of the twentieth century, it was successfully introduced in some ...European countries, mainly for hunting purposes, i.e. in Croatia, the Czech Republic, Italy, and Spain. We used neutral genetic markers, the mitochondrial DNA control region sequence and microsatellite loci, to characterize and compare genetic diversity and spatial pattern of genetic structure on different timeframes among all European aoudad populations. Four distinct control region haplotypes found in European aoudad populations indicate that the aoudad has been introduced in Europe from multiple genetic sources, with the population in the Sierra Espuña as the only population in which more than one haplotype was detected. The number of detected microsatellite alleles within all populations (< 3.61) and mean proportion of shared alleles within all analysed populations (< 0.55) indicates relatively low genetic variability, as expected for new populations funded by a small number of individuals. In STRUCTURE results with K = 2-4, Croatian and Czech populations cluster in the same genetic cluster, indicating joined origin. Among three populations from Spain, Almeria population shows as genetically distinct from others in results, while other Spanish populations diverge at K = 4. Maintenance of genetic diversity should be included in the management of populations to sustain their viability, specially for small Czech population with high proportion of shared alleles (0.85) and Croatian population that had the smallest estimated effective population size (Ne = 5.4).
Soil bulk density (BD) is often used to assess soil properties related to soil structure and general soil quality, or to convert weight units to volume/area units. Because collecting undisturbed soil ...samples (cores) and directly measuring BD is laborious and time-consuming, data on BD are often lacking. Pedotransfer functions (PTFs) can be used to predict BD from more readily available (easily measured) properties. However, specific PTFs for specific range of soils should be developed. In this study, soil organic matter (SOM) and clay contents of 90 forest Pseudogleys horizons, distributed across 11 locations in continental Croatia, were used to develop a multiple linear regression equation that predicts BD. The results have shown that the increase in BD due to the unit increase in clay content is lower than the decrease in BD due to the unit decrease in SOM content. PTF performance was relatively high (R.sub.adj.sup.2=77.5%, RMSE=0.1 g*cm.sup.-3, MAE=0.08 g*cm.sup.-3), showing that missing data on soil BD of Croatian Pseudogleys (or other similar soils, formed on similar parent materials) can be estimated reasonably well by using it. However, care should be taken when dealing with arable soils, which have different properties, compared with the natural soils considered herein.
The development of automated, image-based, high-throughput plant phenotyping enabled the simultaneous measurement of many plant traits. Big and complex phenotypic datasets require advanced ...statistical methods which enable the extraction of the most valuable traits when combined with other measurements, interpretation, and understanding of their (eco)physiological background. Nutrient deficiency in plants causes specific symptoms that can be easily detected by multispectral imaging, 3D scanning, and chlorophyll fluorescence measurements. Screening of numerous image-based phenotypic traits of common bean plants grown in nutrient-deficient solutions was conducted to optimize phenotyping and select the most valuable phenotypic traits related to the specific nutrient deficit. Discriminant analysis was used to compare the efficiency of groups of traits obtained by high-throughput phenotyping techniques (chlorophyll fluorescence, multispectral traits, and morphological traits) in discrimination between nutrients nitrogen (N), phosphorus (P), potassium (K), magnesium (Mg), and iron (Fe) at early and prolonged deficiency. Furthermore, a recursive partitioning analysis was used to select variables within each group of traits that show the highest accuracy for assigning plants to the respective nutrient deficit treatment. Using the entire set of measured traits, the highest classification success by discriminant function was achieved using multispectral traits. In the subsequent measurements, chlorophyll fluorescence and multispectral traits achieved comparably high classification success. Recursive partitioning analysis was able to intrinsically identify variables within each group of traits and their threshold values that best separate the observations from different nutrient deficiency groups. Again, the highest success in assigning plants into their respective groups was achieved based on selected multispectral traits. Selected chlorophyll fluorescence traits also showed high accuracy for assigning plants into control, Fe, Mg, and P deficit but could not correctly assign K and N deficit plants. This study has shown the usefulness of combining high-throughput phenotyping techniques with advanced data analysis to determine and differentiate nutrient deficiency stress.
Recently, techniques available for identifying clusters of individuals or boundaries between clusters using genetic data from natural populations have expanded rapidly. Consequently, there is a need ...to evaluate these different techniques. We used spatially-explicit simulation models to compare three spatial Bayesian clustering programs and two edge detection methods. Spatially-structured populations were simulated where a continuous population was subdivided by barriers. We evaluated the ability of each method to correctly identify boundary locations while varying: (i) time after divergence, (ii) strength of isolation by distance, (iii) level of genetic diversity, and (iv) amount of gene flow across barriers. To further evaluate the methods' effectiveness to detect genetic clusters in natural populations, we used previously published data on North American pumas and a European shrub. Our results show that with simulated and empirical data, the Bayesian spatial clustering algorithms outperformed direct edge detection methods. All methods incorrectly detected boundaries in the presence of strong patterns of isolation by distance. Based on this finding, we support the application of Bayesian spatial clustering algorithms for boundary detection in empirical datasets, with necessary tests for the influence of isolation by distance.
The translocation of wild animal species became a common practice worldwide to re-establish local populations threatened with extinction. Archaeological data confirm that chamois once lived in the ...Biokovo Mountain but, prior to their reintroduction in the 1960s, there was no written evidence of their recent existence in the area. The population was reintroduced in the period 1964-1969, when 48 individuals of Balkan chamois from the neighbouring mountains in Bosnia and Herzegovina were released. The main objective of this study was to determine the accuracy of the existing historical data on the origin of the Balkan chamois population from the Biokovo Mountain and to assess the genetic diversity and population structure of the source and translocated populations 56 years after reintroduction. Sixteen microsatellite loci were used to analyse the genetic structure of three source chamois populations from Prenj, Čvrsnica and Čabulja Mountains and from Biokovo Mountain. Both STRUCTURE and GENELAND analyses showed a clear separation of the reintroduced population on Biokovo from Prenj's chamois and considerable genetic similarity between the Biokovo population and the Čvrsnica-Čabulja population. This suggests that the current genetic composition of the Biokovo population does not derive exclusively from Prenj, as suggested by the available literature and personal interviews, but also from Čvrsnica and Čabulja. GENELAND analysis recognised the Balkan chamois from Prenj as a separate cluster, distinct from the populations of Čvrsnica and Čabulja. Our results thus highlight the need to implement genetic monitoring of both reintroduced and source populations of endangered Balkan chamois to inform sustainable management and conservation strategies in order to maximise the chances of population persistence.
Hillslope hydrology in agricultural landscapes is complex due to a variety of hydropedological processes and field management possibilities. The aim was to test if there are any differences in soil ...properties and water regime along the hillslope and to compare vineyard rows (vine) with inter-rows (grass) area for those properties. The study determined that there are significant differences in the contents of soil particle fractions, pH, and humus content along the slope (
< 0.0001), with lower confidence level in bulk density
< 0.05). Differences between row and inter-row space were significant for the pH, humus, and silt content, but for sand and clay content, and bulk density differences were not determined. The study determined differences in soil water content among five slope positions (
< 0.0001), and between row and inter-row vineyard space (all with
< 0.05). Where in the upper slope positions (e. g., P1) soil water content was higher than on lower slope positions. Higher soil water content was observed at higher slope positions, associated with clay content. However, it can be concluded that the retention of moisture on the slope is more influenced by local-scale soil properties (primarily soil texture) and variability of the crop (row/inter-row) than the position on the slope.
In the early twentieth century, European mouflon was introduced in Croatia, while all introductions in Slovenia occurred in the 1950s and 1960s. Although majority of the introductions were ...historically documented, occasional cases involving individuals of unknown origin have likely contributed to a mixed genetic pool in established colonies. To understand the impact of past management and the potential founder effects on contemporary mouflon populations, we performed the first genetic study of the species in these two countries. Utilising next-generation sequencing of both mitochondrial control region (mtDNA CR) and major histocompatibility complex (MHC DRB exon 2), our study scrutinises the genetic diversity and structure of these populations. Additionally, the origins and genetic variability of mouflon in Croatia and Slovenia were compared with reference samples from Czech Republic, Sardinia (Italy), and Corsica (France). The mtDNA haplotype network showed that the majority of mouflon from Slovenia are closely related to mouflon from Sardinia, and only few shared the same haplotypes with mouflon from Croatia. Some mouflon from mainland Croatia share identical or closely related haplotypes with individuals from the initially established population in this country (on the Brijuni Archipelago), while others belong to a distinctly different cluster. We found five MHC alleles previously reported for mouflon in Europe, and genetic diversity was similar in both studied countries. We observed an excess of the Ovar-DRB1*07012/*07012 genotype, and only a few individuals exhibited the advantageous genotypes for parasite infection (Ovar-DRB1*0114 allele and Ovar-DRB1*0324/*0114 genotype). Genetic data showed that the population origins are generally in agreement with the written historical records, although we found signals of release of extra individuals into certain colonies.
Crop production might suffer severe economic losses due to insufficient fertiliser availability. Specific signs of nutrient shortage influence plant morphology and physiology. This study pioneers the ...non-destructive tracking and characterization of nutrient deficiency symptoms in common beans using multispectral and chlorophyll fluorescence imaging, offering novel insights into the dynamic responses of plant morphology and physiology to specific nutrient shortages. Plants were cultivated in nutrient solutions with and without nitrogen (N), phosphorus (P), potassium (K), magnesium (Mg), iron (Fe) and control solution. Measurements were taken every three days for 12 days (MT1-MT4) of growth. K and N deficit plants had the earliest symptoms and most noticeable changes, whereas Fe deficiency plants had the slowest and least noticeable symptoms. Except for Fe, the most responsive chlorophyll fluorescence parameter was electron transport rate, which was reduced in plants from all nutrient deprivation treatments compared to control. All nutrient deficit treatments reduced leaf area at MT2, which was the most affected morphological parameter. The green leaf index, reflection in blue, and specific green were the most affected multispectral traits by nutritional deprivation. These findings demonstrate that plant nutrient deficit can be recognized and tracked non-destructively utilizing multispectral and chlorophyll fluorescence analysis. Overall, our work not only sheds light on the dynamics of nutrient deficiency in common bean plants but also offers practical implications for improving crop management strategies using non-destructive digital technology.
Potato (
L.) is vulnerable to high temperatures, which are expected to increase in frequency and duration due to climate change. Nondestructive phenotyping techniques represent a promising technology ...for helping the adaptation of agriculture to climate change. In this study, three potato cultivars (Agria, Bellarosa and Desiree) were grown under four temperature treatments: 20/15 °C (T1), 25/20 °C (T2), 30/25 °C (T3), and 35/30 °C (T4). Multispectral and chlorophyll fluorescence imaging, 3D multispectral scanning, and gas exchange analysis were used to study the effect of moderate heat stress on potato morphology and physiology and select phenotypic traits most responsive to increased temperatures. The most responsive morphological traits to increased temperatures are related to decreased leaf area, which were detected already at T2. Increased temperatures (already T2) also changed leaf spectral characteristics, indicated by increased red, green, and blue reflectance and decreased far-red reflectance and anthocyanin index (ARI). Regarding chlorophyll fluorescence, increasing temperatures (T2) caused an increase in minimal fluorescence of both dark-adapted (F
) and light-adapted (F
') plants. Stomatal conductance, transpiration rate, photosynthetic rate, instantaneous water use efficiency (WUE), and intrinsic water use efficiency increased from T1 to T3 and decreased again in T4. Using recursive partitioning analysis, the most responsive potato phenotypic traits to increased temperature were leaf area projected (LAP), ARI, F
, and WUE. These traits could be considered marker traits for further studying potato responses to increased temperatures.
During the early 1900s, Northern chamois (
Rupicapra rupicapra
) populations in the northern Dinaric Mountains were extirpated. During the 1960s and 1970s there were several reintroductions of ...individuals from two Northern chamois subspecies (Alpine chamois,
R. r. rupicapra
and Balkan chamois,
R. r. balcanica
) from neighbouring areas in the attempt to re-establish the population. Accurate taxonomic classification, at subspecies level, of the autochthonous extirpated population was not known. To clarify which subspecies was present before reintroduction, we genotyped four male chamois skulls originating from Velebit Mountain, collected around 25 years before the population local extinction. DNA was successfully extracted from middle layer and outer sheath of horns. Assignment based on microsatellite loci, using both Bayesian clustering in STRUCTURE (with q values between 0.55 and 0.73) and DAPC (with individual membership probabilities of 0.99 and 1.00) indicated higher assessed likelihood for the Alpine subspecies.
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