•Soil organic matter is significantly related to crop nutrient composition.•Soil organic matter is impacted by land use type and farm management.•Increasing soil organic matter by 1% can meet the ...nutrient needs of an extra 0.5 persons per hectare.
Global crop yield gains have not be associated with increases in the many macro- and micro-nutrients needed for a balanced human diet. There is thus growing interest in improving agricultural practices to increase nutrient availability to people. Because nutrients in crops come from soil, soil management—such as building soil organic matter—could be a tool in managing agriculture to produce more nutritious food. To understand the relationship between soil organic matter and nutritional quality, we measured soil organic matter fractions, crop yield, and wheat nutrient composition on smallholder farms along a land-use and land-cover gradient in Ethiopia. We found that wheat yields and protein content were related to organic matter nitrogen, and zinc content was related to organic matter carbon. Increasing organic matter carbon by 1% was associated with an increase in zinc equivalent to the needs of 0.2 additional people per hectare; increasing organic matter nitrogen by 1% was associated with an increase in protein equivalent to the daily needs of 0.1 additional people per hectare. Soil organic matter—and its associated fractions—was greatest in soils closest to a state forest and in home gardens (as opposed to in wheat fields). Wheat fields closer to the forest had elevated soil organic matter fractions relative to wheat soils closest to the market town. Our results indicate that realistic gains in soil organic matter could make human-health-relevant increases in wheat nutrient content. Soil organic matter management can therefore be an additional tool for feeding the world well.
Litter decomposition is a biogeochemical process fundamental to element cycling within ecosystems, influencing plant productivity, species composition and carbon storage. Climate has long been ...considered the primary broad‐scale control on litter decomposition rates, yet recent work suggests that plant litter traits may predominate. Both decomposition paradigms, however, rely on inferences from cross‐biome litter decomposition studies that analyse site‐level means. We re‐analyse data from a classical cross‐biome study to demonstrate that previous research may falsely inflate the regulatory role of climate on decomposition and mask the influence of unmeasured local‐scale factors. Using the re‐analysis as a platform, we advocate experimental designs of litter decomposition studies that involve high within‐site replication, measurements of regulatory factors and processes at the same local spatial grain, analysis of individual observations and biome‐scale gradients. Synthesis. We question the assumption that climate is the predominant regulator of decomposition rates at broad spatial scales. We propose a framework for a new generation of studies focused on factoring local‐scale variation into the measurement and analysis of soil processes across broad scales. Such efforts may suggest a revised decomposition paradigm and ultimately improve confidence in the structure, parameter estimates and hence projections of biogeochemical models.
Epidemiology of Renal Cell Carcinoma Capitanio, Umberto; Bensalah, Karim; Bex, Axel ...
European Urology,
01/2019, Volume:
75, Issue:
1
Journal Article
Peer reviewed
Open access
Despite the improvement in renal cell carcinoma (RCC) diagnosis and management observed during the last 2 decades, RCC remains one of the most lethal urological malignancies. With the expansion of ...routine imaging for many disorders, an increasing number of patients who harbour RCC are identified incidentally.
To summarise and compare RCC incidence and mortality rates, analyse the magnitude of risk factors, and interpret these epidemiological observations in the context of screening and disease management.
The primary objective of the current review was to retrieve and describe worldwide RCC incidence/mortality rates. Secondly, a narrative literature review about the magnitude of the known risk factors was performed. Finally, data retrieved from the first two steps were elaborated to define the clinical implications for RCC screening.
RCC incidence and mortality significantly differ among individual countries and world regions. Potential RCC risk factors include behavioural and environmental factors, comorbidities, and analgesics. Smoking, obesity, hypertension, and chronic kidney disease represent established risk factors. Other factors have been associated with an increased RCC risk, although selection biases may be present and controversial results have been reported.
Incidence of RCC varies worldwide. Within the several RCC risk factors identified, smoking, obesity, and hypertension are most strongly associated with RCC. In individuals at a higher risk of RCC, the cost effectiveness of a screening programme needs to be assessed on a country-specific level due to geographic heterogeneity in incidence and mortality rates, costs, and management implications. Owing to the low rates of RCC, implementation of accurate biomarkers appears to be mandatory.
The probability of harbouring kidney cancer is higher in developed countries and among smokers, obese individuals, and individuals with hypertension.
Renal cell carcinoma (RCC) incidence and mortality rates vary significantly around the globe. Risk factors for RCC are smoking, obesity, hypertension, and chronic kidney disease. In individuals at a higher risk of RCC, the cost effectiveness of a screening programme needs to be assessed on a country specific level. Owing to the low incidence of RCC, there is an unmet need for accurate biomarkers.
Over the last several decades, voluntary certification programs have become a key approach to promote sustainable supply chains for agricultural commodities. These programs provide premiums and other ...benefits to producers for adhering to environmental and labor practices established by the certifying entities. Following the principles of Cochrane Reviews used in health sciences, we assess evidence to evaluate whether voluntary certification of tropical agricultural commodities (bananas, cocoa, coffee, oil palm, and tea) has achieved environmental benefits and improved economic and social outcomes for small-scale producers at the level of the farm household. We reviewed over 2600 papers in the peer-review literature and identified 24 cases of unique combinations of study area, certification program, and commodity in 16 papers that rigorously analyzed differences between treatment (certified households) and control groups (uncertified households) for a wide range of response variables. Based on analysis of 347 response variables reported in these papers, we conclude that certification is associated on average with positive outcomes for 34% of response variables, no significant difference for 58% of variables, and negative outcomes for 8% of variables. No significant differences were observed for different categories of responses (environmental, economic and social) or for different commodities (banana, coffee and tea), except negative outcomes were significantly less for environmental than other outcome categories (p = 0.01). Most cases (20 out of 24) investigated coffee certification and response variables were inconsistent across cases, indicating the paucity of studies to conduct a conclusive meta-analysis. The somewhat positive results indicate that voluntary certification programs can sometimes play a role in meeting sustainable development goals and do not support the view that such programs are merely greenwashing. However, results also indicate that certification is not a panacea to improve social outcomes or overall incomes of smallholder farmers. Rigorous analysis, standardized criteria, and independent evaluation are needed to assess effectiveness of certification programs in the future.
La FAM fatale: USP9X in development and disease Murtaza, Mariyam; Jolly, Lachlan A.; Gecz, Jozef ...
Cellular and molecular life sciences : CMLS,
06/2015, Volume:
72, Issue:
11
Journal Article
Peer reviewed
Open access
Deubiquitylating enzymes (DUBs), act downstream of ubiquitylation. As such, these post-post-translational modifiers function as the final arbitrators of a protein substrate’s ubiquitylation status, ...thus regulating its fate. In most instances, DUBs moderate the absolute level of a substrate, its locality or activity, rather than being an “all-or-none” phenomenon. Yet, disruption of this quantitative regulation can produce dramatic qualitative differences. The ubiquitin-specific protease 9X (USP9X/FAM) is a substrate-specific DUB, which displays an extraordinarily high level of sequence conservation from
Drosophila
to mammals. It is primarily the recent revelations of USP9X’s pivotal role in human cancers, both as oncogene or tumour suppressor, in developmental disorders including intellectual disability, epilepsy, autism and developmental delay that has led to a subsequent re-examination of its molecular and cellular functions. Results from experimental animal models have implicated USP9X in neurodegeneration, including Parkinson’s and Alzheimer’s disease, as well as autoimmune diseases. In this review, we describe the current and accumulated knowledge on the molecular, cellular and developmental aspects of USP9X function within the context of the biological consequences during normal development and disease.
•Knowledge of agrobiodiversity impacts on ecosystem services is limited to a few taxa and services.•Functional traits can produce more predictive knowledge of agrobiodiversity impacts on ecosystem ...services.•This approach should be applied across levels of complexity present in agriculture, such as trophic and spatial scales.•Functional traits can be used to create agricultural management strategies that increase ecosystem services.
Functional trait research has led to greater understanding of the impacts of biodiversity in ecosystems. Yet, functional trait approaches have not been widely applied to agroecosystems and understanding of the importance of agrobiodiversity remains limited to a few ecosystem processes and services. To improve this understanding, we argue here for a functional trait approach to agroecology that adopts recent advances in trait research for multitrophic and spatially heterogeneous ecosystems. We suggest that trait values should be measured across environmental conditions and agricultural management regimes to predict how ecosystem services vary with farm practices and environment. This knowledge should be used to develop management strategies that can be easily implemented by farmers to manage agriculture to provide multiple ecosystem services.
Abstract
Higher levels of soil organic matter improve soil water retention, meaning they could mitigate agricultural yield losses from drought. Yet evidence to support such claims is mixed and ...incomplete. Using data from 12 376 county-years in the United States of America, we show that counties with higher soil organic matter are associated with greater yields, lower yield losses, and lower rates of crop insurance payouts under drought. Under severe drought, an increase of 1% soil organic matter was associated with a yield increase of 2.2 ± 0.33 Mg ha
−1
(32.7 bu ac
−1
) and a 36 ± 4.76% reduction in the mean proportion of liabilities paid. Similar, yet smaller, effects were found for less severe levels of drought and this effect was reduced as soil clay content increased. Confirmatory pathway analyses indicate that this positive association of soil organic matter and yields under drought is partially explained by positive effects of soil organic matter on available water capacity and cation exchange capacity, but that soil organic matter may be imparting yield protection via mechanisms not fully captured by those metrics. Overall, our results suggest soil organic matter predicts yield resilience at regional scales in the United States. We argue that data on soil organic matter should be used in agricultural policy and financial planning, with our analyses providing quantitative evidence of the co-benefits of soil organic matter believed fundamental to advancing soil health and carbon sequestration initiatives.
The sweet potato is one of the world’s most widely consumed crops, yet its evolutionary history is poorly understood. In this paper, we present a comprehensive phylogenetic study of all species ...closely related to the sweet potato and address several questions pertaining to the sweet potato that remained unanswered. Our research combined genome skimming and target DNA capture to sequence whole chloroplasts and 605 single-copy nuclear regions from 199 specimens representing the sweet potato and all of its crop wild relatives (CWRs). We present strongly supported nuclear and chloroplast phylogenies demonstrating that the sweet potato had an autopolyploid origin and that Ipomoea trifida is its closest relative, confirming that no other extant species were involved in its origin. Phylogenetic analysis of nuclear and chloroplast genomes shows conflicting topologies regarding the monophyly of the sweet potato. The process of chloroplast capture explains these conflicting patterns, showing that I. trifida had a dual role in the origin of the sweet potato, first as its progenitor and second as the species with which the sweet potato introgressed so one of its lineages could capture an I. trifida chloroplast. In addition, we provide evidence that the sweet potato was present in Polynesia in pre-human times. This, together with several other examples of long-distance dispersal in Ipomoea, negates the need to invoke ancient human-mediated transport as an explanation for its presence in Polynesia. These results have important implications for understanding the origin and evolution of a major global food crop and question the existence of pre-Columbian contacts between Polynesia and the American continent.
•The sweet potato had a single origin (monophyletic) by autopolyploidy•Ipomoea trifida is most probably the progenitor of the sweet potato•Ipomoea trifida had a dual role in the origin of the sweet potato•The sweet potato arrived in Polynesia by long-distance dispersal in pre-human times
Muñoz-Rodríguez et al. clarify several questions on the origin and evolution of the sweet potato that remained unanswered. They demonstrate that the sweet potato had a single origin by autopolyploidy and reveal a dual role of its progenitor. They also show that the sweet potato most likely arrived in Polynesia by long-distance dispersal in pre-human times.
Food allergy: A practice parameter update—2014 Sampson, Hugh A., MD; Aceves, Seema, MD, PhD; Bock, S. Allan, MD ...
Journal of allergy and clinical immunology,
11/2014, Volume:
134, Issue:
5
Journal Article
Peer reviewed
This parameter was developed by the Joint Task Force on Practice Parameters, representing the American Academy of Allergy, Asthma & Immunology (AAAAI); the American College of Allergy, Asthma & ...Immunology (ACAAI); and the Joint Council of Allergy, Asthma & Immunology (JCAAI). The AAAAI and the ACAAI have jointly accepted responsibility for establishing “Food Allergy: A practice parameter update—2014.” This is a complete and comprehensive document at the current time. The medical environment is a changing one, and not all recommendations will be appropriate for all patients. Because this document incorporated the efforts of many participants, no single individual, including those who served on the Joint Task Force, is authorized to provide an official AAAAI or ACAAI interpretation of these practice parameters. Any request for information about or an interpretation of these practice parameters by the AAAAI or ACAAI should be directed to the Executive Offices of the AAAAI, ACAAI, and JCAAI. These parameters are not designed for use by pharmaceutical companies in drug promotion.
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