A morphological and genetic characterization of autochthonous ‘Saragolla’ wheats, currently cultivated in Abruzzo Region (Italy), was carried out. Using 15 simple sequence repeat (SSR) markers and 24 ...UPOV morphological traits we compared: (a) 13 ‘Saragolla’ genotypes with traits of the italicum/apulicum botanical varieties (Saragolla (Sar.) italicum), (b) 26 ‘Saragolla’ genotypes with traits of leucurum/affine botanical varieties (Sar. leucurum), (c) 8 breeding varieties (pure lines), and (d) 5 Italian autochthonous wheats and 1 turanicum line (old wheats). One hundred twenty-six (126) alleles were identified. The number of alleles per locus spanned from 4 to 15 and the number of alleles per genotype varied between 12 and 21. Values of gene diversity (Nei) across the 53 genotypes was 0.17. The groups of Sar. leucurum and Sar. italicum genotypes were morphologically distinguishable from the groups of old wheats and pure lines. Likewise, the analysis of molecular data using the discriminant analysis revealed that genotypes with the Sar. italicum phenotype displayed distinct genetic differences from Sar. leucurum, pure lines and old wheats. These results make Sar. italicum genotypes distinguishable and eligible as a conservation variety. Ward's clustering analysis of the 53-genotype pool showed that the ‘Saragolla’ landrace is a valuable repository of genetic diversity.
Agriculture faces great challenges to overcome global warming and improve system sustainability, requiring access to novel genetic diversity. So far, wild populations and local landraces remain ...poorly explored. This is notably the case for the two diploid species, Brassica oleracea L. (CC, 2n=2x=18) and B. rapa L. (AA, 2n=2x=20). In order to explore the genetic diversity in both species, we have collected populations in their centre of origin, the Mediterranean basin, on a large contrasting climatic and soil gradient from northern Europe to southern sub-Saharan regions. In these areas, we also collected 14 populations belonging to five B. oleracea closely related species. Our objective was to ensure the absence of species misidentification at the seedling stage among the populations collected and to describe thereafter their origins. We combined flow cytometry, sequencing of a species-specific chloroplast genomic region, as well as cytogenetic analyses in case of unexpected results for taxonomic verification. Out of the 112 B. oleracea and 154 B. rapa populations collected, 103 and 146, respectively, presented a good germination rate and eighteen populations were misidentified. The most frequent mistake was the confusion of these diploid species with B. napus. Additionally for B. rapa, two autotetraploid populations were observed. Habitats of the collected and confirmed wild populations and landraces are described in this study. The unique plant material described here will serve to investigate the genomic regions involved in adaptation to climate and microbiota within the framework of the H2020 Prima project ‘BrasExplor’.
The Linum Insertion Sequence 1 (LIS-1) occurs in the genetically plastic flax genotypes in response to the lack or excess of mineral and water nutrition, but also naturally, and can be transmitted to ...the progeny. We have analyzed 21 ancient Belarusian varieties of flax Linum usitatissimum convar. elongatum Vav. et Ell. The LIS-1 presence or absence was checked for individual plants in at minimum two generations with primer-specific polymerase chain reaction (PCR) and agarose gel electrophoresis. The studied flax varieties formed four groups: non-responsive varieties (LIS-1 was not found, group NR); responsive, which formed and completely lost the insertion (group R0); responsive, which formed and retained LIS-1 (group R1); and responsive unstable (group R2). A statistically significant difference was found in ‘plant height’ (p < 0.05), ‘technical length of the stem’ (p < 0.05) between R0 and NR, and R2 and NR LIS-1 groups. The machine learning algorithm random forest classifier was used to predict the presence, absence or heterozygosity of LIS-1 in flax plants based on their growth and reproductive characteristics. As a result, the accuracy of the prediction was 98% on test data. In terms of sources for the selection of fibre flax varieties adaptive to environmental challenges, the most promising group consists of responsive varieties that have formed LIS-1 insertion (R0, R1 and R2 groups).
Small public breeding programmes have many barriers to adopting technology, particularly creating and using genetic marker panels for genomic-based decisions in selection. Here we report the creation ...of a DArTag panel of 3,000 loci distributed across the tetraploid genome of blueberry (Vaccinium corymbosum) for use in molecular breeding and genomic prediction. The creation of this marker panel brings cost-effective and rapid genotyping capabilities to public and private breeding programmes. The open access provided by this platform will allow genetic data sets generated on the marker panel to be compared and joined across projects, institutions and countries. This genotyping resource has the power to make routine genotyping a reality for any breeder of blueberry.
Russian olive (Elaeagnus angustifolia L.) is a native tree species of Iran and the Caucasus region growing in both wild habitats and cultivated settings. The area under cultivation of this tree has ...been increasing in recent years due to its ability to withstand drought and soil salinity. Revealing the complete genome of this tree holds great importance. To achieve this, a local cultivar of Russian olive was sampled from the northwest region of Iran for whole genome sequencing using the Illumina platform resulting in approximately 6GB of raw data. A quality check of the raw data indicated that approximately 45,011,388 read pairs were obtained from sequences totalling around 6.7×109bp with CG content of 31%. To assemble the genome of the Russian olive tree, the raw data was aligned to a reference sequence of the jujube (Ziziphus jujuba) genome, which is the taxonomically closest plant to the Russian olive. Assembly of alignments yielded a genome size of 553,696,299bp consisting of 339,701 contigs. The N50 value was 5,300 with an L50 value of 24,921 and GC content of the Russian olive genome was 31.5%. This research represents the first report on the genome of the Iranian cultivar of the Russian olive tree.
Even though genetic resources represent a fundamental reservoir of options to achieve sustainable development goals in a changing world, they are overlooked in the policy agenda and severely ...threatened. The conservation of genetic resources relies on complementary in situ and ex situ approaches appropriately designed for each type of organism. Environmental and socioeconomic changes raise new challenges and opportunities for sustainable use and conservation of genetic resources. Aiming at a more integrated and adaptive approach, European scientists and genetic resources managers with long experience in the agricultural crop, animal and forestry domains joined their expertise to address three critical challenges: (1) how to adapt genetic resources conservation strategies to climate change, (2) how to promote in situ conservation strategies and (3) how can genetic resources conservation contribute to and benefit from agroecological systems. We present here 31 evidence-based statements and 88 key recommendations elaborated around these questions for policymakers, conservation actors and the scientific community. We anticipate that stakeholders in other genetic resources domains and biodiversity conservation actors across the globe will have interest in these crosscutting and multi-actor recommendations, which support several biodiversity conservation policies and practices.
Glandular trichomes are physical and chemical barriers used by some tomato wild relatives to confer resistance against insect pests and diseases transmitted by them. Solanum galapagense has been ...identified as one of the potential sources of insect pest resistance. The present study aimed to examine the trichome diversity and acylsugar concentration of 26 accessions of S. galapagense along with one cultivated tomato (S. lycopersicum) and one cherry tomato (S. l. cerasiforme) cultivar. The results revealed large phenotypic variation among S. galapagense accessions for all studied traits. The S. galapagense accessions had significantly higher trichome types IV density on the adaxial and abaxial surfaces of the leaf and greater acylsugar concentration but a smaller leaflet area than the cultivated tomato. The selected cherry tomato line represents greater trichome type IV density and acylsugar concentration than other groups. The acylsugar concentration was positively associated with trichome type IV but negatively associated with trichome type V on both leaf surfaces. DNA markers revealed the presence of two previously identified whitefly-resistance alleles in S. galapagense accessions. This study will support breeding programs aiming to improve insect pest resistance in tomato cultivars using crop wild relatives.
This study provides a comprehensive examination of the conservation status of plant genetic resources in Yemen, with a particular focus on the national genebank, natural sites and field genebanks. ...Employing a historical and descriptive approach, the study sheds light on the inception of field inventories and collection surveys, the roles and contributions of various projects and institutions since the late 1980s, and the quantities of seed samples collected from different crop varieties and species. Additionally, the study highlights the challenges faced, especially during the last decade following the eruption of war in early 2015. Specifically, it emphasizes the detrimental impact of the war and sanctions, resulting in the loss of conserved seed samples, and the damage and sabotage of field genebanks. In contrast, there is a need to ensure the enhancement of functioning seed systems and agriculture production even during times of conflict to reduce the impact of food insecurity. To conclude, the study puts forth several proposals, with a strong emphasis on expanding conservation efforts beyond natural sites, enhancing the capabilities for seed conservation in genebanks, and building genetic resources capacity.
The great diversity of agroecological conditions and production systems present in Ethiopia contributes to the country’s large livestock population and makes it suitable for various forms of ...livestock production. The Ethiopian livestock sector provides significant economic and social benefits at household levels and to the national economy. Ethiopia has 32 recognized indigenous cattle breeds, of which the Sheko is a known trypano-tolerant breed found in the southwest of the country. However, in recent times, the Sheko population has been declining mainly due to interbreeding with local Zebu cattle and to a shift in the production system. This paper aims to review and illustrate the current status and management practices of the Sheko cattle breed towards conserving and improving the breed, and the production system. The feed resources in the Sheko home area are natural pasture and crop residues, with limited utilization of cultivated improved forage. Husbandry practices such as feeding, watering, housing and veterinary services are priority areas where improvements are needed. Enhancing the conservation and improvement of the breed would greatly benefit from the active improvement of various stakeholders, including governmental policymakers and non-governmental organizations. Therefore giving special attention to enhancing the management systems in the breed’s home area is crucial. This involves the direct engagement of research centres, extension workers; and higher learning institutions in proximity to the area all aimed at the conservation and improvement of the Sheko cattle breed.
Small public breeding programmes have many barriers to adopting technology, particularly creating and using genetic marker panels for genomic-based decisions in selection. Here we report the creation ...of a DArTag panel of 3,000 loci distributed across the alfalfa (Medicago sativa L.) genome for use in molecular breeding and genomic insight. The creation of this marker panel brings cost-effective and rapid genotyping capabilities to alfalfa breeding programmes. The open access provided by this platform will allow genetic data sets generated on the marker panel to be compared and joined across projects, institutions and countries. This genotyping resource has the power to make routine genotyping a reality for any breeder of alfalfa.
