Arctic charr (Salvelinus alpinus) were fed for 99 days on experimental diets with 40% of fish meal replaced, on a crude protein basis, with intact yeast (Saccharomyces cerevisiae) (ISC), extracted ...yeast (ESC), Rhizopus oryzae fungus (RHO) or de‐shelled blue mussels (Mytilus edulis) (MYE). The fish were evaluated for growth performance, nutrient digestibility and fish intestinal function. Growth performance, retention of crude protein and sum of amino acids were not affected in fish fed diets ISC or MYE compared with those fed the reference (REF) diet. However, fish fed diet ISC displayed decreased digestibility of crude protein and indispensable amino acids and decreased intestinal barrier function compared with fish fed the REF diet. Fish fed diet ESC exhibited decreased growth performance and protein retention, but had comparable digestibility to fish fed the REF diet. Fish fed diets MYE and RHO showed similar performance in terms of growth, nutrient digestibility and intestinal barrier function. Overall, the results indicated that blue mussel and intact S. cerevisiae yeast are promising protein sources for Arctic charr.
Arctic charr (
Salvelinus alpinus
L. complex) has been widely used as a model system for studies in evolutionary ecology because of its diversity in feeding ecology, habitat use, life history forms, ...and associated morphologies observed in matured individuals. However, we still know relatively little about traits exhibited early in life of the species, although the trait diversity of matured individuals may largely be shaped during development. Egg size is a key determinant of various traits exhibited early in life. Therefore, describing egg size variation within- and between-individuals as well as the link between egg size and adult traits will be a useful step in understanding the early life trait diversity of Arctic charr. Here, using Greenlandic Arctic charr, which includes alternative life history forms (i.e. anadromous and resident) and spawning habitat use (i.e. lake and river spawner), we described egg size variation (i.e. clutch-mean egg diameter and within-clutch variation) and explored the link between egg size variation and female body length, life history form, and spawning habitats. As in many other fishes, clutch-mean egg diameter increased with female body length. No significant effect of other female traits on clutch mean-egg diameter was detected, suggesting that female body size variation could be a direct cause of early life history trait variation. On the other hand, we found that the degree of within-clutch variation of the anadromous life history form was higher than that of the resident life history form. The pattern could be interpreted in an adaptive context. For instance, given that the anadromous life history form tends to be semelparous, anadromous females could decrease the likelihood of complete reproductive failure by producing variable-sized offspring within a clutch since at least some offspring are expected to be matched to the prevailing environment.
Phenotypic variation in populations of fishes that inhabit postglacial lakes is often associated with trophic specialisations. A common sympatric foraging divergence seen in Arctic charr is into ...either plankton or littoral-zoobenthos feeding specialisms. In this study, we report a sympatric polymorphic Arctic charr population which is not centred on this divergence but instead manifests as a plankton (pelagic)—profundal zoobenthos foraging specialisms. The head shape of profundal fish was round and robust, the body thick set and pectoral fins long and wide. In contrast, the head of pelagic fish was pointed and slender, the body fusiform in shape and with short, narrow pectoral fins. There was no difference between profundal and pelagic fish in gill raker number. Body lipid content was significantly higher in pelagic fish as were the number or
Diphyllobothrium
cysts. The carbon isotope ratio was more heavily depleted in profundal fish. There was no dietary overlap in the prey items recovered from stomach contents of profundal and pelagic fish. We suggest the proximate driver behind the sympatric divergence was the successful exploitation of the profundal zone. The consequences of this have led to the development of adaptations in morphology and behaviour to support and maintain this divergence.
In Norway, 29 fjords and 52 rivers have been designated for protection in order to prevent the infection of important populations of wild salmonids with salmon lice of farm origin. We evaluated the ...effect of this protection on the lice infection pressure for wild salmonids based on lice counts performed on wild-caught sea trout and Arctic charr inside one-third of these protected fjords (known as 'National Salmon Fjords'). Results indicate that these areas may provide a certain extent of protection against lice of farm origin, but their configuration will play a key role in their success. When the size and shape of a protected area are such that fish farms are kept at a minimum distance (calculated here as at least 30 km, but this distance is likely site-dependent), wild fish seem unaffected by the direct lice infection pressure imposed by fish farms. In contrast, the effects of small protected fjords were strongly dependent on the production pattern of the aquaculture industry in the surrounding area, and we found a clear correlation between lice levels on wild salmonids and lice production in nearby salmon farms. To establish more precise management practices, both in National Sal mon Fjords and other fjord systems along the Norwegian coast, the development and validation of accurate distribution and abundance models for the dispersion of planktonic lice larvae is needed; this could also be the basis for an area management system based on 'maximum sustainable lice loads' or 'lice quotas.'
Routine implementation of genomic information for guiding selection decisions is not yet common in the majority of aquaculture species. Reduced representation sequencing approaches offer a ...cost‐effective solution for obtaining genome‐wide information in species with a limited availability of genomic resources. In the current study, we implemented double‐digest restriction site‐associated DNA sequencing (ddRAD‐seq) on an Arctic charr strain with the longest known history of selection (approximately 40 years) aiming to improve selection decisions. In total, 1730 animals reared at four different farms in Sweden and spanning from year classes 2013–2017 were genotyped using ddRAD‐seq. Approximately 5000 single nucleotide polymorphisms (SNPs) were identified, genetic diversity‐related metrics were estimated, and genome‐wide association studies (GWAS) for body length at different time points and age of sexual maturation were conducted. Low genetic differentiation amongst animals from the different farms was observed based on both the results from pairwise Fst values and principal component analysis (PCA). The existence of associations was investigated between the mean genome‐wide heterozygosity of each full‐sib family (year class 2017) and the corresponding inbreeding coefficient or survival to the eyed stage. A moderate correlation (−0.33) was estimated between the mean observed heterozygosity of each full‐sib family and the corresponding inbreeding coefficient, while no linear association was obtained with the survival to the eyed stage. GWAS did not detect loci with major effect for any of the studied traits. However, genomic regions explaining more than 1% of the additive genetic variance for either studied traits were suggested across 14 different chromosomes. Overall, key insights valuable for future selection decisions of Arctic charr have been obtained, suggesting ddRAD as an attractive genotyping platform for obtaining genome‐wide information in a cost‐effective manner.
Refeeding, following a period of food deprivation will often lead to compensatory growth. Although many studies have focused on molecular mechanisms behind this accelerated growth response in fish, ...little is known on the roles of protein and metabolism. We also assessed, for the first time, the potential roles of miRNAs in regulating compensatory growth. Artcic charr, Salvelinus alpinus, a northern freshwater species, was deprived of food for 101 days and then fed to satiety for 126 days. The refeeding period resulted in compensatory growth, with a partial compensation of body mass. The feed deprivation period lead to a decrease in hepatosomatic index (HSI) and intestinal somatic index (ISI). HSI and ISI were then gradually replenished during early refeeding, following a lag phase prior to the compensatory growth response. mRNA transcripts regulating protein degradation via the autophagy pathway (Cathepsin D and Cathepsin L) in muscle were upregulated during feed restriction and downregulated after refeeding, which could allow for greater protein accretion in muscle, facilitating compensatory growth. Transcript levels from the ubiquitin proteasome pathway (Mafbx and Murf1) and the calpain system (Calpain 7 and Calpastatin) suggested that these pathways were not involved in regulating compensatory growth. Furthermore, we've shown that miRNAs (miR-29a and miR-223) could be involved in fish glycogen homeostasis during the early stages of refeeding. These findings provide a deeper understanding of the molecular mechanisms regulating growth in fish.
Biodensity is a major factor affecting the production and welfare of farmed fishes. Arctic charr (Salvelinus alpinus) (average mass 176.9 ± 3.9 g) were held at biodensities of 30, 60, 90, 120, and ...150 kg/m3 (4 replicates per treatment) during a 91 day study which examined key growth, stress physiology, and welfare parameters. During experimentation fish were fed to near satiety, and a random subsample of 20 fish (5 per replicate tank) were collected from each treatment every 21 days. Biodensity was found to have no significant effect on mortality rates or physical fin damage. Growth rates were lower in charr reared at the highest biodensities (120, and 150 kg/m3), while feed efficiency was negatively affected at both the highest (120, and 150 kg/m3) and lowest (30 kg/m3) biodensities. Plasma cortisol indicated that Arctic charr are more stressed at lower biodensities, but was not correlated with growth or feed efficiency measures. The results support an optimal biodensity range for charr culture between 60 and 90 kg/m3 to optimize production and welfare.
•The purpose of this study was to provide an estimation of an optimal biodensity for Arctic charr aquaculture, with emphasis on production performance and welfare. High intensity aquaculture operations rely upon high biodensities which may compromise the welfare of the animals being farmed (Browman et al., 2018; Moccia, 2013). Thus, there are two drivers at play in determining an optimal biodensity with respect to the economics of fish growth and production performance, and the ethics associated with welfare consideration. Ultimately, the determination of an optimal biodensity for Arctic charr aquaculture must be the result of the careful consideration of these two approaches.•Biodensity had no effect on mortality, plasma glucose or fin damage (caudal and dorsal). However the combination of reduced growth rates (i.e. lower TGC's) observed at the high densities (120, and 150 kg/m3) and reduced feed efficiency (0.56–0.83) at the extremes (30, 120, and 150 kg/m3) suggest a density between 60 and 90 kg/m3 for optimal economic gains. The morphometric data presented here also provide additional considerations for the choice of stocking density in terms of the potential commercial productivity for Arctic charr.•Alternatively, the results of the welfare analyses show evidence of reduced stress (as assessed by circulating levels of plasma cortisol) at higher biodensities, with fish stocked at 150 kg/m3 exhibiting the lowest levels of all treatments.•These two approaches provide slightly different result on which to base a suggestion of an optimal biodensity. The economics approach suggests stocking at densities >30 kg/m3 and <90 kg/m3 for the benefit of producing product of similar quality while improving feed efficiency and growth. However, stocking at higher densities (150 kg/m3) resulted in reduced stress which is associated with the welfare status of farmed animals (Turnbull et al., 2008). Therefore, using a combination of an economics and ethics based approach, the suggested biodensity for Arctic charr aquaculture is somewhere in the range of 60–90 kg/m3 (actuals 65.1–99.0 kg/m3). Within this range, Arctic charr exhibited optimal feed efficiency and growth while maintaining cortisol levels below the 10 ng/mL which is a nominal threshold of cortisol implied for stressed salmonids (Pickering and Pottinger, 1989).
The complete mitochondrial genomes were sequenced in three individuals of Arctic charr Salvelinus alpinus alpinus. The genome sequences were 16,655 and 16,657 bp in length, and the gene arrangement, ...composition, and size are very similar to the charr genomes published previously. The difference between the three genomes studied is low, 0.09%. The level of sequence divergence between S. alpinus alpinus and S. alpinus oquassa inferred from the complete mitochondrial genomes is relatively low (0.36%), indicating recent divergence of the taxa and/or potential historical hybridization between different lineages upon secondary contact.
Determining the timing and location of fish reproductive events is crucial for the implementation of correct management and conservation schemes. Conventional methods used to monitor these events are ...often unable to assess the spawning activity directly or can be invasive and therefore problematic. This is especially the case when threatened fish populations are the study subject, such as the Arctic charr (Salvelinus alpinus L.) populations in Windermere (Cumbria, UK). Arctic charr populations have been studied in this lake since the 1940s, and the locations and characteristics of spawning grounds have been described in detail using techniques such as hydroacoustics, as well as physical and visual surveys of the lake bottom. Here, in conjunction with established netting surveys, we added an environmental DNA (eDNA) metabarcoding approach to assess the spatial distribution of Arctic charr in the lake throughout the year to test whether this tool could allow us to identify spawning locations and activity. Sampling was carried out between October 2017 and July 2018 at three locations in the lake, covering putative and known spawning sites. eDNA metabarcoding provided accurate spatial and temporal characterization of Arctic charr spawning events. Peaks of Arctic charr relative read counts from eDNA metabarcoding were observed during the spawning season and at specific locations of both putative and known spawning sites. Net catches of mature Arctic charr individuals confirmed the association between the Arctic charr spawning activity and the peaks of eDNA metabarcoding relative read counts. This study demonstrates the ability of eDNA metabarcoding to effectively and efficiently characterize the spatial and temporal nature of fish spawning in lentic systems.
This study demonstrates the ability of environmental DNA (eDNA) metabarcoding to provide an accurate spatial and temporal characterization of Arctic charr spawning events in a lake setting. We observed peaks of Arctic charr relative read counts from eDNA metabarcoding during the spawning season and at specific locations of putative and known spawning sites. Net catches of mature Arctic charr individuals confirmed the association between the Arctic charr spawning activity and the peaks of eDNA.
– Among the species in the family Salmonidae, those represented by the genera Salmo, Salvelinus, and Oncorhynchus (subfamily Salmoninae) are the most studied. Here, various aspects of phenotypic and ...life‐history variation of Atlantic salmon Salmo salar L., brown trout Salmo trutta L., and Arctic charr Salvelinus alpinus (L.) are reviewed. While many strategies and tactics are commonly used by these species, there are also differences in their ecology and population dynamics that result in a variety of interesting and diverse topics that are challenging for future research. Atlantic salmon display considerable phenotypic plasticity and variability in life‐history characters ranging from fully freshwater resident forms, where females can mature at approximately 10 cm in length, to anadromous populations characterised by 3–5 sea‐winter (5SW) salmon. Even within simple 1SW populations, 20 or more spawning life‐history types can be identified. Juveniles in freshwater can use both fluvial and lacustrine habitats for rearing, and while most smolts migrate to sea during the spring, fall migrations occur in some populations. At sea, some salmon undertake extensive oceanic migrations while other populations stay within the geographical confines of areas such as the Baltic Sea. At the other extreme are those that reside in estuaries and return to freshwater to spawn after spending only a few months at sea. The review of information on the diversity of life‐history forms is related to conservation aspects associated with Atlantic salmon populations and current trends in abundance and survival. Brown trout is indigenous to Europe, North Africa and western Asia, but was introduced into at least 24 countries outside Europe and now has a world‐wide distribution. It exploits both fresh and salt waters for feeding and spawning (brackish), and populations are often partially migratory. One part of the population leaves and feeds elsewhere, while another part stays as residents. In large, complex systems, the species is polymorphic with different size morphs in the various parts of the habitat. Brown trout feed close to the surface and near shore, but large individuals may move far offshore. The species exhibits ontogenetic niche shifts partly related to size and partly to developmental rate. They switch when the amount of surplus energy available for growth becomes small with fast growers being younger and smaller fish than slow growers. Brown trout is an opportunistic carnivore, but individuals specialise at least temporarily on particular food items; insect larvae are important for the young in streams, while littoral epibenthos in lakes and fish are most important for large trout. The sexes differ in resource use and size. Females are more inclined than males to become migratory and feed in pelagic waters. Males exploit running water, near‐shore and surface waters more than females. Therefore, females feed more on zooplankton and exhibit a more uniform phenotype than males. The Arctic charr is the northernmost freshwater fish on earth, with a circumpolar distribution in the Holarctic that matches the last glaciation. Recent mtDNA studies indicate that there are five phylogeographic lineages (Atlantic, Arctic, Bering, Siberian and Acadian) that may be of Pleistocene origin. Phenotypic expression and ecology are more variable in charr than in most fish. Weights at maturation range from 3 g to 12 kg. Population differences in morphology and coloration are large and can have some genetic basis. Charr live in streams, at sea and in all habitats of oligotrophic lakes, including very deep areas. Ontogenetic habitat shifts between lacustrine habitats are common. The charr feed on all major prey types of streams, lakes and near‐shore marine habitats, but has high niche flexibility in competition. Cannibalism is expressed in several cases, and can be important for developing and maintaining bimodal size distributions. Anadromy is found in the northern part of its range and involves about 40, but sometimes more days in the sea. All charr overwinter in freshwater. Partial migration is common, but the degree of anadromy varies greatly among populations. The food at sea includes zooplankton and pelagic fish, but also epibenthos. Polymorphism and sympatric morphs are much studied. As a prominent fish of glaciated lakes, charr is an important species for studying ecological speciation by the combination of field studies and experiments, particularly in the fields of morphometric heterochrony and comparative behaviour.
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