Abstract Climate change is producing large impacts on rivers, amplifying hydrological extremes. Prolonged drought periods result in dramatic stress for river biota and associated processes due to low discharge, reducing the interactions between rivers and their lateral environments or leading to hydrological intermittency. New quantitative methods are needed, to correlate discharge with the available riverine habitats. In this work we have mapped the wet surface and paths of two stretches of the Taro and Trebbia Apennine rivers, analyzing satellite images from periods with contrasting discharge. The considered stretches are critical due to different human pressures (large water withdrawals for agriculture and industrial use) and are particularly vulnerable to further, climate‐driven discharge reductions. The produced images offer multiple possibilities to extract qualitative and quantitative information at the whole stretch scales, including habitat reduction along with decreasing discharge, threshold discharge limiting lateral interactions, or the evaluation of longitudinal river continuity. We discuss the limitation and the potentialities of the method and the maps produced in terms of possible application in the field of river geomorphology, ecology, the definition of ecological river flow, risk assessment, and river management.