In this study, we address the independent set enumeration problem. Although several efficient enumeration algorithms and careful analyses have been proposed for maximal independent sets, no fine-grained analysis has been given for the non-maximal variant. As the main result, we propose an enumeration algorithm for the non-maximal variant that runs in O(q) amortized time and linear space, where q is the clique number, i.e., the maximum size of a clique in an input graph. Note that the proposed algorithm works correctly even if the exact value of q is unknown. It is optimal for graphs with a bounded clique number, such as, triangle-free graphs, bipartite graphs, planar graphs, bounded degenerate graphs, nowhere dense graphs, and F-free graphs for any fixed graph F, where a F-free graph is a graph that has no copy of F as a subgraph. Furthermore, with a slight modification of our proposed algorithm, we can enumerate independent sets with the size at most k in the same time and space complexity. This problem is a generalization of the original problem since this is equal to the original problem if k=n.