Nitrate (NO3−) is a key component of secondary inorganic aerosols and PM2.5. However, the contributions of nitrogen oxides (NOx) emission sources to NO3− in PM2.5 remain poorly constrained. This study measured nitrogen (N) isotopes of NO3− (hereafter as δ15N-NO3-) in PM2.5 collected at Beijing in 2014. We observed that δ15N-NO3- values in PM2.5 (−2.3‰ − 19.7‰; 7.3 ± 5.4‰ annually) were significantly higher in winter (11.9 ± 4.4‰) than in summer (2.2 ± 2.5‰). The δ15N differences between source NOx and NO3− in PM2.5 (hereafter as Δ values) were estimated by a computation module as 7.8 ± 2.2‰ − 10.4 ± 1.6‰ (8.8 ± 2.4‰). Using the Δ values and δ15N values of NOx from major fossil (coal combustion, vehicle exhausts) and non-fossil sources (biomass burning, microbial N cycle), contributions of major NOx sources to NO3− in PM2.5 were further estimated by the SIAR model. We found that seasonal variations of δ15N-NO3- values in PM2.5 of Beijing were mainly caused by those of NOx contributions from coal combustion (38 ± 10% in winter, 20 ± 9% in summer). Annually, NOx from coal combustion, vehicle exhausts, biomass burning, and microbial N cycle contributed 28 ± 12%, 29 ± 17%, 27 ± 15%, and 16 ± 7% to NO3− in PM2.5, respectively, showing actually comparable contributions between non-fossil NOx (43 ± 16%) and fossil NOx (57 ± 21%). These results are useful for planning the reduction of NOx emissions in city environments and for elucidating relationships between regional NOx emissions and atmospheric NO3− pollution or deposition. Display omitted •δ15N-NO3- values of PM2.5 in Beijing were higher in winter than in summer.•Seasonal δ15N-NO3- variations of PM2.5 were mainly caused by those of NOx emission from coal combustion.•Fossil and non-fossil NOx sources contributed equally to NO3− of PM2.5 in Beijing. Isotope partitioning of major nitrate sources in PM2.5