The presence of pollutants in estuary and oceanic systems is a global problem and a serious concern to human and environmental health. Usually, environmental monitoring studies consider classical persistent organic pollutants (POPs). However, the lists of POPs keep continuously growing and new POPs and other emerging pollutants should be considered in new monitoring programs. So, this study aimed to investigate the distribution and profile of classical POPs (polychlorinated biphenyl (PCBs), organochlorine pesticides (OCPs), and polycyclic aromatic hydrocarbons (PAHs)), new POPs and emerging pollutants (polybrominated diphenyl ethers (PBDEs), perfluorinated compounds (PFCs), novel halogenated flame retardants (NFRs) and UV filters) in bivalve mollusc samples (both raft-cultivated and wild mussel, Mytilus galloprovincialis; cockle, Cerestoderma edule; and clam, Ruditapes descussatus) collected in nine Galician Rias during the period February 2012 to February 2013. A predominance of PAHs (6.8–317 ng/g dry weight (dw)) followed by PCBs (0.47–261 ng/g dw), UV filters (1.4–157 ng/g dw), PFCs (0.53–62 ng/g dw), OCPs (0.07–29 ng/g dw), PBDEs (0.31–6.6 ng/g dw) and NFRs (0.07–3.2 ng/g dw) was found in the studied bivalves, being the UV filter octocrylene the compound found at the highest concentration (141 ng/g dw in a cockle sample), while the PAHs chrysene and benzo(b)fluoranthene were the compounds with the highest average concentration (20 and 14 ng/g dw, respectively). Inter-species, temporal and geographical variations on pollutants concentration were assessed by multifactorial analysis of variance. Statistically significant differences among the type of mollusc were observed for levels of organochlorinated and organobrominated pollutants considered (PCBs, OCPs and PBDEs), which were detected at higher concentrations in wild mussel. On the other hand, the main PFCs and UV filters showed a higher detection frequency in cockle samples. Location played significant role for PAHs, PCBs and the main PBDEs, being the most polluted rias those more industrialized and populated, i.e. A Coruña, Ferrol and/or Vigo. Finally, sampling timepoint was also a significant factor for most of the families considered but with different profiles. Thus, PAHs and PCBs showed higher concentrations in both February 2012 and 2013 and lower in August 2012, while the main PBDEs were measured at higher concentrations in November 2012 and lower in February 2012; and the main NFRs, PFCs and UV filters were present at lower levels in February 2013. Display omitted •POPs, new POPs and emerging pollutants were studied in mussels, clams and cockles•PAHs was the family found at higher concentration•The UV filter octocrylene was the compound found at higher concentration levels.•Wild mussels show the highest level of organochlorinated and organobrominated compounds•Those more industrialized and populated rias are the most polluted by PAHs, PCBs and PBDEs.