Campylobacter jejuni is the most common bacterial cause of human gastroenteritis worldwide. Due to the sporadic nature of infection, sources often remain unknown. Multilocus sequence typing (MLST) ...has been successfully applied to population genetics of Campylobacter jejuni and mathematical modelling can be applied to the sequence data. Here, we analysed the population structure of a total of 250 Finnish C. jejuni isolates from bovines, poultry meat and humans collected in 2003 using a combination of Bayesian clustering (BAPS software) and phylogenetic analysis.
In the first phase we analysed sequence types (STs) of 102 Finnish bovine C. jejuni isolates by MLST and found a high diversity totalling 50 STs of which nearly half were novel. In the second phase we included MLST data from domestic human isolates as well as poultry C. jejuni isolates from the same time period. Between the human and bovine isolates we found an overlap of 72.2%, while 69% of the human isolates were overlapping with the chicken isolates. In the BAPS analysis 44.3% of the human isolates were found in bovine-associated BAPS clusters and 45.4% of the human isolates were found in the poultry-associated BAPS cluster. BAPS reflected the phylogeny of our data very well.
These findings suggest that bovines and poultry were equally important as reservoirs for human C. jejuni infections in Finland in 2003. Our results differ from those obtained in other countries where poultry has been identified as the most important source for human infections. The low prevalence of C. jejuni in poultry flocks in Finland could explain the lower attribution of human infection to poultry. Of the human isolates 10.3% were found in clusters not associated with any host which warrants further investigation, with particular focus on waterborne transmission routes and companion animals.
Helicobacter spp. Other than H. pylori Rossi, Mirko; Hänninen, Marja-Liisa
Helicobacter (Cambridge, Mass.),
09/2012, Letnik:
17, Številka:
s1
Journal Article
Recenzirano
Significant advances have been made over the last 12 months in the understanding of the biology of non‐H. pylori Helicobacter species (NHPH). Several studies have investigated the association between ...NHPH and human disease, including Crohn's disease, lithiasis, liver disease, coronary disease, gastritis, and pyoderma gangrenosum‐like ulcers. Novel Helicobacter taxa were identified in new vertebrate hosts, and new methodologies in the fields of identification of Helicobacter spp. and evaluation of antibiotic resistance were described. The genome of the first human‐derived gastric NHPH strain (Helicobacter bizzozeronii CIII‐1) was sequenced, and several studies elucidated functions of different genes in NHPH. A number of important investigations regarding pathogenesis and immunopathobiology of NHPH infections have been published including the description of a new urease in Helicobacter mustelae. Finally, the effects of the gut microbiota and probiotics on NHPH infections were investigated.
Failures in the drinking water distribution system cause gastrointestinal outbreaks with multiple pathogens. A water distribution pipe breakage caused a community-wide waterborne outbreak in Vuorela, ...Finland, July 2012. We investigated this outbreak with advanced epidemiological and microbiological methods. A total of 473/2931 inhabitants (16%) responded to a web-based questionnaire. Water and patient samples were subjected to analysis of multiple microbial targets, molecular typing and microbial community analysis. Spatial analysis on the water distribution network was done and we applied a spatial logistic regression model. The course of the illness was mild. Drinking untreated tap water from the defined outbreak area was significantly associated with illness (RR 5.6, 95% CI 1.9-16.4) increasing in a dose response manner. The closer a person lived to the water distribution breakage point, the higher the risk of becoming ill. Sapovirus, enterovirus, single Campylobacter jejuni and EHEC O157:H7 findings as well as virulence genes for EPEC, EAEC and EHEC pathogroups were detected by molecular or culture methods from the faecal samples of the patients. EPEC, EAEC and EHEC virulence genes and faecal indicator bacteria were also detected in water samples. Microbial community sequencing of contaminated tap water revealed abundance of Arcobacter species. The polyphasic approach improved the understanding of the source of the infections, and aided to define the extent and magnitude of this outbreak.
The signal transducer and activator of transcription (STAT) family of transcription factors orchestrate hematopoietic cell differentiation. Recently, mutations in STAT1, STAT5B, and STAT3 have been ...linked to development of immunodysregulation polyendocrinopathy enteropathy X-linked–like syndrome. Here, we immunologically characterized 3 patients with de novo activating mutations in the DNA binding or dimerization domains of STAT3 (p.K392R, p.M394T, and p.K658N, respectively). The patients displayed multiorgan autoimmunity, lymphoproliferation, and delayed-onset mycobacterial disease. Immunologically, we noted hypogammaglobulinemia with terminal B-cell maturation arrest, dendritic cell deficiency, peripheral eosinopenia, increased double-negative (CD4−CD8−) T cells, and decreased natural killer, T helper 17, and regulatory T-cell numbers. Notably, the patient harboring the K392R mutation developed T-cell large granular lymphocytic leukemia at age 14 years. Our results broaden the spectrum of phenotypes caused by activating STAT3 mutations, highlight the role of STAT3 in the development and differentiation of multiple immune cell lineages, and strengthen the link between the STAT family of transcription factors and autoimmunity.
•Germline activating STAT3 mutations were detected in 3 patients with autoimmunity, hypogammaglobulinemia, and mycobacterial disease.•T-cell lymphoproliferation, deficiency of regulatory and helper 17 T cells, natural killer cells, dendritic cells, and eosinophils were common.
A Gram-stain-negative, microaerophilic strain, 80(YS1)T, with a spiral-shaped morphology and 1-2 sheathed flagella at each end of the cells was isolated from the gastric mucosa of Marmota himalayana, ...the animal reservoir of Yersinia pestis in China, on the Qinghai-Tibet Plateau. The strain grew at 30, 35 and 42 °C, but not at 25 °C. Growth was in the form of a thinly spreading film on brain heart infusion agar containing 8 % sheep blood under microaerobic conditions. The strain did not hydrolyse urea or hippurate, and did not grow on media containing 1 % glycine. It reduced nitrate to nitrite, and was catalase- and alkaline-phosphatase-positive, susceptible to nalidixic acid and resistant to cefalotin. It was positive for genus-specific PCR for the genus Helicobacter, but could not be classified to any recognized species according biochemical tests results. Therefore, a phylogenetic study based on 16S rRNA, 23S rRNA, 60 kDa heat-shock protein (hsp60) and gyrase subunit B (gyrB) genes was conducted. The 16S rRNA gene sequence (1468 bp) analysis showed that strain 80(YS1)T was most closely related to Helicobacter marmotae (96.7 % similarity). The 23S rRNA gene sequence (2879 bp) analysis showed that the strain was most closely related to Helicobacter canis (96 % similarity). The complete gyrB gene sequence (2325 bp) analysis showed that it was related phylogenetically to Helicobacter cinaedi (79.4 % similarity) and H. marmotae (79.1 % similarity). Analysis of the partial sequence of the hsp60 gene of strain 80(YS1)T showed closest similarity to the sequences of Helicobacter equorum (82 %) and H. cinaedi (81 %), respectively. However, there was no hsp60 sequence of H. marmotae available for analysis. The data of morphological, biochemical and phylogenetic characteristics all supported that this strain represents a novel species. The name Helicobacter himalayensis sp. nov. is proposed for this novel species with the type strain 80(YS1)T ( = CGMCC 1.12864T = DSM 28742T).
•Ploughing degraded soils at studied Norway spruce forest sites in Finnish Lapland.•CART of soil physical properties explained 90% of microsites.•CART of soil chemistry explained 74.7% of ...microsites.•Most important chemical variates were C, Mg, Na, Mn, Ca, Ba, Al, Fe and N.•Micromorphology of the ploughed tracks are present on LiDAR DEMs after 26 years.
Ploughing disturbance and inversion of soil sequences result in erosion and leaching of suspended solids and nutrients in northern boreal forests. Here, we assessed microsite soil physical-chemical properties at two cut-off spruce (Picea abies L. Karst.) sites 12, 14 and 16 years and microsite morphology with LiDAR DEMs 25 years after ploughings. The sites, one treated with (Marttiini) shoulder ploughing (SP) and the other with tilt ploughing (TP), contained the following microsites: trench, tilt (TP) or shoulder (SP), and untreated soil between the disturbance tracks. Using the classification and regression tree (CART), 90% of the microsites were correctly explained with apparent soil electrical conductivity (σa) and dielectric permittivity (DP). CART of soil chemistry explained 74.7% of microsites with the most important variates being C, Mg, Na, Mn, Ca, Ba, Al, Fe and N. Concentration of the elements in trench were significantly (p = 0) lower than in untreated microsites such that decrease for Al (49%), Ca (46%), S (51%), C (67%), and N (57%) at TP-site, as well as Al (31%), Ca (34%), K (30%), Mg (56%), Na (32%), P (22%), S (32%) and N (37%) at SP-site were observed, respectively. Ploughings had negative impact on the soil properties, such that the artificial regeneration with spruce had failed. Micromorphology still remains after 25 years and losses in soil nutrient supply will continue during consecutive snowmelt events implying that soil inversion does not sustain soil quality in Lapland.
Effects of danofloxacin or consecutive fluoroquinolone and macrolide treatments on resistance development in Campylobacter have remained uncharacterised. Therefore we analysed the development of ...resistance in porcine Campylobacter coli before and after danofloxacin and tylosin treatments at a farrowing farm. Danofloxacin-treated (n=12, group A) and control pigs (n=15, group B) were subsequently treated with tylosin and sampled longitudinally. C. coli were isolated and susceptibilities to ciprofloxacin and erythromycin were assessed, isolates were genotyped with PFGE and resistance-related mutations were identified. Isolates from the danofloxacin-treated pigs had more frequently non-wild type MICs (above the epidemiological cut-off value (ECOFF)) for ciprofloxacin (P<0.001) and erythromycin (P<0.05) than those isolated before danofloxacin or those from the controls. Subsequent tylosin treatment increased proportion of isolates with non-wild type MICs for erythromycin in both groups A and B (P<0.01) and, interestingly, proportion of isolates with non-wild type MICs for ciprofloxacin in group B (P<0.001) with high MICs (128μg/ml). PFGE analysis revealed treatments selecting predominant genotypes with variable resistance patterns and decreasing initial diversity of genotypes. The most common genotype had mainly high MICs for ciprofloxacin among danofloxacin-treated pigs but wild type MICs (below the ECOFF) among the controls housed in the same pens. This suggests that the non-wild type isolate was rarely transmitted or outcompeting wild type genotype in the control pigs without selection pressure. Isolates exhibiting non-wild type MICs for ciprofloxacin harboured the C257T (Thr-86-Ile) mutation in the gyrA gene. In conclusion, a high dose of danofloxacin used at the farm did not prevent emergence of isolates with high MICs for ciprofloxacin. After subsequent tylosin treatment isolates had even higher MICs for ciprofloxacin and erythromycin than before the treatment. Therefore, controlled use of antimicrobials in food animal production is essential.
Pathogenic bacteria in Finnish bulk tank milk Ruusunen, Marjo; Salonen, Marleena; Pulkkinen, Hanna ...
Foodborne pathogens and disease,
02/2013, Letnik:
10, Številka:
2
Journal Article
Recenzirano
While the quality of raw cow milk in Finland is known for its high hygienic standard, with the national average total bacterial count being below 10(4) CFU/mL annually, the prevalence of pathogenic ...bacteria in Finnish raw milk is underreported. The aim of this study was to determine the occurrence of Listeria monocytogenes, thermophilic Campylobacter spp., Salmonella spp., stx-positive Escherichia coli (STEC), coagulase-positive staphylococci, Yersinia spp., and Bacillus cereus group in raw cow milk samples collected from bulk tanks at 183 Finnish farms. Additionally, the hygienic quality of the milk was studied by determining the total bacterial and E. coli counts. L. monocytogenes was detected in 5.5% of the milk samples, with concentrations varying from <1 to 30 CFU/mL. Thermophilic Campylobacter spp. or Salmonella spp. were not detected in any of the samples. STEC with Shiga toxin-encoding stx2 was detected in 2.7% of the samples. Yersinia enterocolitica was detected in 7.7% of the samples; however, all isolates were negative for ail, suggesting that they were non-pathogenic. Coagulase-positive staphylococci were detected in 34.4% of the samples, with an average concentration of 25 CFU/mL in the positive samples. Members of the B. cereus group were detected in 20.8% of the samples, with an average concentration of 1 CFU/mL in the positive samples. No relationship was detected between E. coli or the total bacterial count and the presence of pathogenic bacteria, which suggests that pathogens can be present also in farms with excellent production hygiene. Although the concentration of pathogenic bacteria in fresh raw milk was mainly relatively low, it should be borne in mind that some of the pathogenic bacteria can survive and multiply at refrigeration temperatures and may cause a disease with a very low infectious dose. Thus, consumption of raw milk and related products poses a potential risk for food poisoning.
PDF
