Dynamic conservation of forest genetic resources (FGR) means maintaining the genetic diversity of trees within an evolutionary process and allowing generation turnover in the forest. We assessed the ...network of forests areas managed for the dynamic conservation of FGR (conservation units) across Europe (33 countries). On the basis of information available in the European Information System on FGR (EUFGIS Portal), species distribution maps, and environmental stratification of the continent, we developed ecogeographic indicators, a marginality index, and demographic indicators to assess and monitor forest conservation efforts. The pan-European network has 1967 conservation units, 2737 populations of target trees, and 86 species of target trees. We detected a poor coincidence between FGR conservation and other biodiversity conservation objectives within this network. We identified 2 complementary strategies: a species-oriented strategy in which national conservation networks are specifically designed for key target species and a site-oriented strategy in which multiple-target units include so-called secondary species conserved within a few sites. The network is highly unbalanced in terms of species representation, and 7 key target species are conserved in 60% of the conservation units. We performed specific gap analyses for 11 tree species, including assessment of ecogeographic, demographic, and genetic criteria. For each species, we identified gaps, particularly in the marginal parts of their distribution range, and found multiple redundant conservation units in other areas. The Mediterranean forests and to a lesser extent the boreal forests are underrepresented. Monitoring the conservation efficiency of each unit remains challenging; however, <2% of the conserved populations seem to be at risk of extinction. On the basis of our results, we recommend combining species-oriented and site-oriented strategies. La conservación dinámica de recursos genéticos forestales (RGF) implica mantener la diversidad genética en el contexto de un proceso evolutivo y permitir el recambio generacional en el bosque. Evaluamos la red de áreas forestales manejadas para la conservación dinámica de RGF (unidades de conservación) en Europa (33 países). Con base en la información disponible en el Sistema Europeo de Información sobre RGF (Portal EUFGIS), mapas de distribución de especies y la estratificación ambiental del continente, desarrollamos indicadores ecogeográficos, un índice de marginalidad e indicadores demográficos para evaluar y monitorear esfuerzos de conservación de bosques. La red pan-europea tiene 1967 unidades de conservación, 2737 poblaciones de árboles y 86 especies de árboles. Detectamos poca coincidencia entre la conservación de RGF y otros objetivos de conservación en la red. Identificamos 2 estrategias complementarias: una estrategia enfocada en especies en la que específicamente se diseñan redes nacionales de conservación enfocadas a especies clave y una estrategia enfocada en sitios en la que unidades múltiples incluyen las llamadas especies secundarias conservadas en unos cuantos sitios. La red está muy desequilibrada en términos de la representación de especies, y 7 especies clave son conservadas en 60% de las unidades de conservación. Realizamos análisis de vacíos específicos para 11 especies de árboles, incluyendo evaluación de criterios ecogeográficos, demográficos y genéticos. Para cada especie, identificamos vacíos, particularmente en las partes marginales de su rango de distribución, y encontramos múltiples unidades de conservación redundantes en otras áreas. Los bosques Mediterráneos y en menor extensión los bosques boreales están insuficientemente representados. El monitoreo de la eficiencia de conservación de cada unidad sigue siendo un reto; sin embargo, <2% de las poblaciones conservadas parece estar en riesgo de extinción. Con base en nuestros resultados, recomendamos combinar estrategias enfocadas en especies con estrategias enfocadas en sitios.
The in vivo resorption rate of two injectable apatitic calcium phosphate cements used in clinics (Graftys® HBS and NORIAN®) was compared, using a good laboratory practice (GLP) study based on an ...animal model of critical‐sized bone defect. To rationalize the markedly different biological properties observed for both cements, key physical features were investigated, including permeability and water‐accessible porosity, total porosity measured by mercury intrusion and gravimetry, and microstructure. Due to a different concept for creating porosity between the two cements investigated in this study, a markedly different microstructural arrangement of apatite crystals was observed in the intergranular space, which was found to significantly influence both the mechanical strength and in vivo degradation of the two calcium phosphate cements.
A central issue in plant evolutionary ecology is to understand how several coordinated suites of traits (i.e. traits syndrome) may be jointly selected within a single species. This study aims to ...describe patterns of variation and co‐variation of functional traits in a water‐stressed tree population and test their relationships with performance traits.
Within a Mediterranean population of Fagus sylvatica experiencing recurrent summer droughts, we investigated the phenotypic variation of leaf unfolding phenology, leaf area (LA), leaf mass per area (LMA), leaf water content (LWC), water use efficiency (WUE) estimated by carbon isotopic discrimination (d13C), twig Huber‐value (HV: the stem cross‐section divided by the leaf area distal to the stem), wood density (WDens), and leaf nitrogen content (Nmass).
First, a principal component analysis revealed that two main axes structured the phenotypic variability: the first axis opposed leaf unfolding earliness and LWC to LMA and WUE; the second axis opposed LA to HV. These two axes can be interpreted as the opposition of two strategies (water economy versus water uptake) at two distinct scales (leaf for the first axis and branches for the second axis). Second, we found that LMA, LA, leaf unfolding and LWC responded differently to competition intensity, while WUE, WDens and HV did not correlate with competition. Third, we found that all studied functional traits were related to growth and/or reproductive performance traits and that these relationships were frequently non‐linear, showing strong interactions between traits.
By highlighting phenotypic clustering of functional traits involved in response to water stress and by evidencing antagonistic selection favouring intermediate trait values as well as trait combinations, our study brought new insights on how natural selection operates on plant functional traits in a stressful environment.
Transcriptomic approaches are relevant for studying virus-host cell dialogues to better understand the physiopathology of infection and the immune response at the cellular level. Pseudorabies virus ...(PrV), a porcine Alphaherpesvirus, is a good model for such studies in pig. Since PrV displays a strong tropism for mucous epithelial cells, we developed a kinetics study of PrV infection in the porcine PK15 epithelial cell line. To identify as completely as possible, viral and cellular genes regulated during infection, we simultaneously analyzed PrV and cellular transcriptome modifications using two microarrays i.e. a laboratory-made combined SLA/PrV microarray, consisting of probes for all PrV genes and for porcine genes contained in the Swine Leukocyte Antigen (SLA) complex, and the porcine generic Qiagen-NRSP8 oligonucleotide microarray. We confirmed the differential expression of a selected set of genes by qRT-PCR and flow cytometry.
An increase in the number of differentially expressed cellular genes and PrV genes especially from 4 h post-infection (pi) was observed concomitantly with the onset of viral progeny while no early global cellular shutoff was recorded. Many cellular genes were down-regulated from 4 h pi and their number increased until 12 h pi. UL41 transcripts encoding the virion host shutoff protein were first detected as differentially expressed at 8 h pi. The viral gene UL49.5 encoding a TAP inhibitor protein was differentially expressed as soon as 2 h pi, indicating that viral evasion via TAP inhibition may start earlier than the cellular gene shutoff. We found that many biological processes are altered during PrV infection. Indeed, several genes involved in the SLA class I antigenic presentation pathway (SLA-Ia, TAP1, TAP2, PSMB8 and PSMB9), were down-regulated, thus contributing to viral immune escape from this pathway and other genes involved in apoptosis, nucleic acid metabolism, cytoskeleton signaling as well as interferon-mediated antiviral response were also modulated during PrV infection.
Our results show that the gene expression of both PrV and porcine cells can be analyzed simultaneously with microarrays, providing a chronology of PrV gene transcription, which has never been described before, and a global picture of transcription with a direct temporal link between viral and host gene expression.
Purpose of Review
Recognizing that in the context of global change, tree genetic diversity represents a crucial resource for future forest adaptation, we review and highlight the major forest ...genetics research achievements of the past decades in biodiversity-rich countries of the Mediterranean region. For this, we conducted a bibliometric analysis of the scientific literature spanning the past thirty years (1991–2020). Putting together the representative regionwide expertise of our co-authorship, we propose research perspectives for the next decade.
Recent Findings
Forest genetics research in Mediterranean countries is organized into three different scientific domains of unequal importance. The domain “Population diversity and Differentiation” related to over 62% of all publications of the period, the domain “Environmental conditions, growth and stress response” to almost 23%, and the domain “Phylogeography” to almost 15%. Citation rate was trending the opposite way, indicating a strong and sustained interest in phylogeography and a rising interest for genetics research related to climate change and drought resistance. The share of publications from Asia and Africa to the total within the Mediterranean increased significantly during the 30-year period analyzed, reaching just below 30% during the last decade.
Summary
Describing poorly known species and populations, including marginal populations, using the full potential of genomic methods, testing adaptation in common gardens, and modeling adaptive capacity to build reliable scenarios for forest management remain strategic research priorities. Delineating areas of high and low genetic diversity, for conservation and restoration, respectively, is needed. Joining forces between forest management and forest research, sharing data, experience, and knowledge within and among countries will have to progress significantly, e.g., to assess the potential of Mediterranean genetic resources as assisted migration material worldwide.
Introductory quote:
Let us collect with care the facts we can observe, let us consult experience wherever we can, and when this experience is inaccessible to us, let us assemble all the inductions which observation of facts analogous to those which escape us can furnish and let us assert nothing categorically; in this way, we shall be able little by little to discover the causes of a multitude of natural phenomena, and, perhaps, even of phenomena which seem the most incomprehensible... J.B. de Lamarck (Philosophie zoologique, 1809), cited by O. L
anglet (1971).
Even though genetic resources represent a fundamental reservoir of options to achieve sustainable development goals in a changing world, they are overlooked in the policy agenda and severely ...threatened. The conservation of genetic resources relies on complementary in situ and ex situ approaches appropriately designed for each type of organism. Environmental and socioeconomic changes raise new challenges and opportunities for sustainable use and conservation of genetic resources. Aiming at a more integrated and adaptive approach, European scientists and genetic resources managers with long experience in the agricultural crop, animal and forestry domains joined their expertise to address three critical challenges: (1) how to adapt genetic resources conservation strategies to climate change, (2) how to promote in situ conservation strategies and (3) how can genetic resources conservation contribute to and benefit from agroecological systems. We present here 31 evidence-based statements and 88 key recommendations elaborated around these questions for policymakers, conservation actors and the scientific community. We anticipate that stakeholders in other genetic resources domains and biodiversity conservation actors across the globe will have interest in these crosscutting and multi-actor recommendations, which support several biodiversity conservation policies and practices.
RNA interference is an attractive strategy to fight against viral diseases by targeting the mRNA of viral genes. Most studies have reported the transient delivery of small interfering RNA or small ...hairpin (shRNA) expression constructs. Here, we present the production of transgenic mice stably expressing shRNA or miRNA targeting the IE180 mRNA (immediate early gene) of the pseudorabies virus (PRV) which infects mice and farm animals. We firstly designed non-retroviral shRNA or miRNA expression vectors. Secondly, we selected the most efficient shRNA construct that targeted either the 5′part or 3′UTR of the IE mRNA and was able to knockdown the target gene expression in cultured cells, by measuring systematically the shRNA content and comparing this with the interfering effects. We then produced four lines of transgenic mice expressing different amounts of shRNA or miRNA in the brain but without signs of stimulation of innate immunity. Lastly, we tested their resistance to PRV infection. In all transgenic lines, we observed a significant resistance to viral challenge, the best being achieved with the shRNA construct targeting the 3′UTR of the IE gene. Viral DNA levels in the brains of infected mice were always lower in transgenic mice, even in animals that did not survive. Finally, this work reports an effective strategy to generate transgenic animals producing shRNA from non-retroviral expression vectors. Moreover, these mice are the first transgenic animal models producing shRNA with a significant antiviral effect but without any apparent shRNA toxicity.
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