Recent Advances on DNAzyme-Based Sensing Huang, Zhimei; Wang, Xiangnan; Wu, Zhenkun ...
Chemistry, an Asian journal,
March 14, 2022, Letnik:
17, Številka:
6
Journal Article
Recenzirano
Owing to the high sensitivity, excellent programmability, and flexible obtainment through in vitro selection, RNA-cleaving DNAzymes have attracted increasing interest in developing DNAzyme-based ...sensors. In this review, we summarize the recent advances on DNAzyme-based sensing applications. We initially conclude two general strategies to expand the library of DNAzmes, in vitro selection to discover new DNAzymes towards different targets of interest and chemical modifications to endue the existing DNAzymes with new function or properties. We then discuss the recent applications of DNAzyme-based sensors for the detection of a variety of important biomoleucles both in vitro and in vivo. Finally, perspectives on the challenges and future directions in the development of DNAzyme-based sensors are provided.
Principle has it that even the most advanced super‐resolution microscope would be futile in providing biological insight into subcellular matrices without well‐designed fluorescent tags/probes. ...Developments in biology have increasingly been boosted by advances of chemistry, with one prominent example being small‐molecule fluorescent probes that not only allow cellular‐level imaging, but also subcellular imaging. A majority, if not all, of the chemical/biological events take place inside cellular organelles, and researchers have been shifting their attention towards these substructures with the help of fluorescence techniques. This Review summarizes the existing fluorescent probes that target chemical/biological events within a single organelle. More importantly, organelle‐anchoring strategies are described and emphasized to inspire the design of new generations of fluorescent probes, before concluding with future prospects on the possible further development of chemical biology.
See below the surface: Fluorescent probes that target individual organelles and elucidate their functionalities are systematically summarized in this Review. The design strategy towards organelle targeting will shed light on basic studies of cell biology.
Abstract
The electrochemical CO
2
reduction to high-value-added chemicals is one of the most promising and challenging research in the energy conversion field. An efficient ECR catalyst based on a ...Cu-based conductive metal-organic framework (Cu-DBC) is dedicated to producing CH
4
with superior activity and selectivity, showing a Faradaic efficiency of CH
4
as high as ~80% and a large current density of −203 mA cm
−2
at −0.9 V vs. RHE. The further investigation based on theoretical calculations and experimental results indicates the Cu-DBC with oxygen-coordinated Cu sites exhibits higher selectivity and activity over the other two crystalline ECR catalysts with nitrogen-coordinated Cu sites due to the lower energy barriers of Cu-O
4
sites during ECR process. This work unravels the strong dependence of ECR selectivity on the Cu site coordination environment in crystalline porous catalysts, and provides a platform for constructing highly selective ECR catalysts.
Electrolyte engineering via fluorinated additives is promising to improve cycling stability and safety of high‐energy Li‐metal batteries. Here, an electrolyte is reported in a porous lithium fluoride ...(LiF) strategy to enable efficient carbonate electrolyte engineering for stable and safe Li‐metal batteries. Unlike traditionally engineered electrolytes, the prepared electrolyte in the porous LiF nanobox exhibits nonflammability and high electrochemical performance owing to strong interactions between the electrolyte solvent molecules and numerous exposed active LiF (111) crystal planes. Via cryogenic transmission electron microscopy and X‐ray photoelectron spectroscopy depth analysis, it is revealed that the electrolyte in active porous LiF nanobox involves the formation of a high‐fluorine‐content (>30%) solid electrolyte interphase layer, which enables very stable Li‐metal anode cycling over one thousand cycles under high current density (4 mA cm−2). More importantly, employing the porous LiF nanobox engineered electrolyte, a Li || LiNi0.8Co0.1Mn0.1O2 pouch cell is achieved with a specific energy of 380 Wh kg−1 for stable cycling over 80 cycles, representing the excellent performance of the Li‐metal pouch cell using practical carbonate electrolyte. This study provides a new electrolyte engineering strategy for stable and safe Li‐metal batteries.
Electrolyte engineering via fluorinated additives is promising to improve the cycling stability and safety of high‐energy Li‐metal batteries. The electrolyte in an active porous LiF nanobox involves the formation of a high‐fluorine‐content (>30%) solid electrolyte interphase layer to achieve a ≈3.5 Ah Li || LiNi0.8Co0.1Mn0.1O2 pouch cell with a specific energy of 380 Wh kg−1 under a practical carbonate electrolyte.
In this work, a versatile point-of-care assay platform based on a microfluidic paper-based analytic device (μPAD) was developed for the simultaneous detection of multiple targets. The μPAD with a ...central zone and six test zones is fabricated by a simple and inexpensive wax printing method. A flower-like hybrid nanocomplex synthesized with specific dual enzymes and Cu3(PO4)2 inorganic nanocrystals is spotted in the test zones on the μPAD, followed by the introduction of assay targets. Using dual-enzyme inorganic hybrid nanoflowers in the μPAD as nanobiocatalysts, which preserve the activity and enhance the stability of the enzymes, based on the H2O2-mediated catalytic oxidizing chromogenic reaction produced by glucose/uric acid, the developed multiplex paper-based nanobiocatalytic system is demonstrated to enable simultaneous and sensitive detection of glucose and uric acid with a detection limit of 60 and 25 μM, respectively. More importantly, it has been successfully used for detecting glucose and uric acid levels in human whole blood samples. The developed multiplex paper-based nanobiocatalytic system features very easy fabrication and operation, low cost, and high sensitivity and has promising prospects for a clinical multianalyte point-of-care test.
There is an urgent need for vaccines against coronavirus disease 2019 (COVID-19) because of the ongoing SARS-CoV-2 pandemic. Among all approaches, a messenger RNA (mRNA)-based vaccine has emerged as ...a rapid and versatile platform to quickly respond to this challenge. Here, we developed a lipid nanoparticle-encapsulated mRNA (mRNA-LNP) encoding the receptor binding domain (RBD) of SARS-CoV-2 as a vaccine candidate (called ARCoV). Intramuscular immunization of ARCoV mRNA-LNP elicited robust neutralizing antibodies against SARS-CoV-2 as well as a Th1-biased cellular response in mice and non-human primates. Two doses of ARCoV immunization in mice conferred complete protection against the challenge of a SARS-CoV-2 mouse-adapted strain. Additionally, ARCoV is manufactured as a liquid formulation and can be stored at room temperature for at least 1 week. ARCoV is currently being evaluated in phase 1 clinical trials.
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•Development of LNP-encapsulated mRNA vaccine (ARCoV) targeting the RBD of SARS-CoV-2•ARCoV induces neutralizing antibodies and T cell immunity in mice and NHPs•ARCoV vaccination confers full protection against SARS-CoV-2 challenge in mice•ARCoV is a thermostable vaccine candidate for phase I studies
ARCoV is an LNP-encapsulated mRNA vaccine platform that is highly immunogenic and safe in mice and non-human primates, conferring protection against challenge with a SARS-CoV-2 mouse-adapted strain.
DNAzymes are a promising platform for metal ion detection, and a few DNAzyme‐based sensors have been reported to detect metal ions inside cells. However, these methods required an influx of metal ...ions to increase their concentrations for detection. To address this major issue, the design of a catalytic hairpin assembly (CHA) reaction to amplify the signal from photocaged Na+‐specific DNAzyme to detect endogenous Na+ inside cells is reported. Upon light activation and in the presence of Na+, the NaA43 DNAzyme cleaves its substrate strand and releases a product strand, which becomes an initiator that trigger the subsequent CHA amplification reaction. This strategy allows detection of endogenous Na+ inside cells, which has been demonstrated by both fluorescent imaging of individual cells and flow cytometry of the whole cell population. This method can be generally applied to detect other endogenous metal ions and thus contribute to deeper understanding of the role of metal ions in biological systems.
Cha cha cha: A catalytic hairpin assembly (CHA) reaction was designed to amplify the signal from photocaged Na+‐specific DNAzyme cleavage to detect endogenous Na+ inside cells. After light activation and in the presence of Na+, the NaA43 DNAzyme cleaves its substrate strand and releases a product strand, which becomes an initiator that can trigger the subsequent CHA signal amplification reaction.
Many in vitro studies have shown that tea catechins had vevarious health beneficial effects. However, inconsistent results between in vitro and in vivo studies or between laboratory tests and ...epidemical studies are observed. Low bioavailability of tea catechins was an important factor leading to these inconsistencies. Research advances in bioavailability studies involving absorption and metabolic biotransformation of tea catechins were reviewed in the present paper. Related techniques for improving their bioavailability such as nanostructure-based drug delivery system, molecular modification, and co-administration of catechins with other bioactives were also discussed.
Direct measurement of DNA repair is critical for the annotation of their clinical relevance and the discovery of drugs for cancer therapy. Here we reported a “repaired and activated” DNAzyme ...(RADzyme) by incorporating a single methyl lesion (O6MeG, 3MeC, or 1MeA) at designated positions through systematic screening. We found that the catalytic activity of the RADzyme was remarkably suppressed and could be restored via enzyme‐mediated DNA repair. Benefit from these findings, a fluorogenic RADzyme sensor was developed for the monitoring of MGMT‐mediated repair of O6MeG lesion. Importantly, the sensor allowed the evaluation of MGMT repair activity in different cells and under drugs treatment. Furthermore, another RADzyme sensor was engineered for the monitoring of ALKBH2‐mediated repair of 3MeC lesion. This strategy provides a simple and versatile tool for the study of the basic biology of DNA repair, clinical diagnosis and therapeutic assessment.
We report “repaired and activated” DNAzymes (RADzymes) as a simple and versatile platform for the measurement of multiple DNA alkylation repair in living cells. The catalytic activity of RADzymes was remarkably suppressed and could be restored via enzyme‐mediated DNA repair, thus providing a useful strategy for the study of DNA repair, clinical diagnosis and therapeutic assessment.
We study the higher-order generalized nonlinear Schrödinger (NLS) equation describing the propagation of ultrashort optical pulse in optical fibres. By using Darboux transformation, we derive the ...superregular breather solution that develops from a small localized perturbation. This type of solution can be used to characterize the nonlinear stage of the modulation instability (MI) of the condensate. In particular, we show some novel characteristics of the nonlinear stage of MI arising from higher-order effects: (i) coexistence of a quasi-Akhmediev breather and a multipeak soliton; (ii) two multipeak solitons propagation in opposite directions; (iii) a beating pattern followed by two multipeak solitons in the same direction. It is found that these patterns generated from a small localized perturbation do not have the analogues in the standard NLS equation. Our results enrich Zakharov’s theory of superregular breathers and could provide helpful insight on the nonlinear stage of MI in presence of the higher-order effects.
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