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  • Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
    Renton, Angela I; Dao, Thuy T; Johnstone, Tom; Civier, Oren; Sullivan, Ryan P; White, David J; Lyons, Paris; Slade, Benjamin M; Abbott, David F; Amos, Toluwani J; Bollmann, Saskia; Botting, Andy; Campbell, Megan E J; Chang, Jeryn; Close, Thomas G; Dörig, Monika; Eckstein, Korbinian; Egan, Gary F; Evas, Stefanie; Flandin, Guillaume; Garner, Kelly G; Garrido, Marta I; Ghosh, Satrajit S; Grignard, Martin; Halchenko, Yaroslav O; Hannan, Anthony J; Heinsfeld, Anibal S; Huber, Laurentius; Hughes, Matthew E; Kaczmarzyk, Jakub R; Kasper, Lars; Kuhlmann, Levin; Lou, Kexin; Mantilla-Ramos, Yorguin-Jose; Mattingley, Jason B; Meier, Michael L; Morris, Jo; Narayanan, Akshaiy; Pestilli, Franco; Puce, Aina; Ribeiro, Fernanda L; Rogasch, Nigel C; Rorden, Chris; Schira, Mark M; Shaw, Thomas B; Sowman, Paul F; Spitz, Gershon; Stewart, Ashley W; Ye, Xincheng; Zhu, Judy D; Narayanan, Aswin; Bollmann, Steffen

    Nature methods, 05/2024, Letnik: 21, Številka: 5
    Journal Article

    Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.

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