Short-term effects of transhumance to high altitude were investigated in Valdostana bovine milk and Fontina cheeses. The study included samples taken at each milking on days 1, 2 and 5 after transhumance compared with 5 days before; individual cow milk was collected and bulk milk was manufactured to cheese. Somatic cell count and milk fat content increased the day immediately after transhumance. In bulk milk, transhumance effects were less pronounced. Except for sour taste, no clear trend for impaired composition or sensory properties was observed in the cheeses produced on the day after transhumance and ripened for 115 days. Milking time and, with that, manufacturing time influenced milk and cheese quality, leading to higher fat and more melting cheeses in the evening. These results allow better characterisation of the changes during this transition and will help farmers to tackle the difficulties in producing cheese during this period.