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  • Design, execution, and anal...
    Miles, Linde A.; Garippa, Ralph J.; Poirier, John T.

    The FEBS journal, September 2016, Letnik: 283, Številka: 17
    Journal Article

    The recently described clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 technology has proven to be an exquisitely powerful and invaluable method of genetic manipulation and/or modification. As such, many researchers have realized the potential of using the CRISPR/Cas9 system as a novel screening method for the identification of important proteins in biological processes and have designed short guide RNA libraries for an in vitro screening. The seminal papers describing these libraries offer valuable information regarding methods for generating the short guide RNA libraries, creating cell lines containing these libraries, and specific details regarding the screening workflow. However, certain considerations are often overlooked that may be important when planning and performing a screen, including which CRISPR library to use and how to best analyze the resulting screen data. In this review, we offer suggestions to answer some of these questions that are not covered as deeply in the papers describing the available CRISPR libraries for an in vitro screening. The recently discovered CRISPR/Cas9 technology allows for researchers to perform genome‐wide screens for many biological processes. However, for screens to generate high quality data, many decisions need to be considered during the design and progression of a CRISPR screen. In this review, we discuss important variables in the design, progression, and downstream steps of a CRISPR genome‐wide screen.